barSeed - Barley Seed Development Database

Probe CUST_13855_PI390587928

Source Contig U35_1266

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13855_PI390587928	Hv_44K_v2	CTCTGGTGTTTCCATATATGGTCATATCAATAAGATATCAACAAAGGTCCATTGTGTTTC	1800	GeneList: black MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.023	0.010	0.472	1.944	1.888	3.596
Raw	29.763	13.938	1013.802	5925.423	2203.967	4558.817

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_51383.1	2312	8e-25	2101 - 2160	100	60 / 60	plus
Harvest21	ABC03346	1932	3e-25	1801 - 1860	100	60 / 60	plus	ABC03346
Harvest35	U35_1266	1932	3e-25	1801 - 1860	100	60 / 60	plus

Contig Sequence (1932 bp)

>U35_1266 1932 Hv_44K_v2
GCTCTTCTTCAAACGATTATGGCAGCCACTAGTTTTGTGTCGCTCTCTTTTTATTTTTGC
ATTTTTCTCTTGTGCCATGGCTCCATGGCACAACTGTTTGGCATGAGCTCTAACCCATGG
CAAAGCTGTCGCCAAGGGGGTTTCAGAGAGTGTACATTCAATAGGCTACAAGCATCTACA
CCACTTCGTCAAGTGAGGTCACATGCAGGCCTGACCGAGTATTTTGATGACCAAAATGAG
CAATTTCGCTGTATTGGTGTATCTGTCATCCGCCGTGTAATCGAACCTCGTGGTTATTTG
TTACCGCGATACCATAACACTCATGGATTAGTGTACATTATCCAAGGAAGTGGTTTTACC
GGATTGTCTTTTCCTGGATGTCCGGCAACATTCCAAAAACAGTTTCAAAAATATGGGCAA
GCACAATCAGTACAGGGTCAAAGTCAGAGCCAAAAGTTCAAAGATGAGCACCAAAAAGTT
CAGCATGTCAGACAAGGAGATGTAATTGCACTACCGGCAGGCATTACACATTGGCTCTAC
AATGACGGTGATGCACCAATTGTGGCAATCTATGTTTTTGACGTAAACAACAATGCTAAT
CAACTTGAACCTAGGCATAAGGAATTTTTGTTGGCTGGCAACTATAGGAGTTCGCAACTT
CACTCTAGTCAAAATATATTCAGTGGTTTTGATGTTCGGTTGCTTCGTGAGTCCTTGGGT
ATAAGTGGAAAAATAGCGCAAAGACTTCAAAGTAAAGATGATGAAATAGGTGACATAATT
CATGTGAATCATACCCTTAAATTTCTAAAGCCTATTTTTACCCAACAACAAGAGCAAGAA
TCCTGCCCATACACTGAATATGAGGAAGGGCAATCTCAAGCAAGACATCCTCAGGAAGAG
CAACCTCAAATGGGACAGCCGCAGGCAAAGCACTATCATGGAGAGCAACCTCAAACGGGA
CAGTCGCAGGCAAAGCACTCTCAGGGAGAGCAAACTCAAACGGGGCAGTCTCAGGCAAAG
CACTTGCATGGAGGGCAACCTGAAGAAGGGCGGGGAGGGCAATCTCAAGAAGAACAATCT
GAGGCAGGGCCATATCCAGGATGTCGACCTCATGCAGGGCAATCTCATGCATCGGAATCA
ACTTATGGTGGTTGGAATGGGTTGGAGGAGAACTTTTGTGATCATAAGCTAACTGCAAAC
ATTGACGATCCCAGTCGTGCTGAAATATACAACCCGCGTGCCGGTACGATAACACATCTC
AACAGCCAAACGTTCCCCATCCTTAACATCGTGCAAATGAGTGCTACAAGAGTACATCTC
TACCAGAATGCCATTATTTCACCACTATGGAACATTAATGCGCATAGTGTGATGTACATG
ATACAAGGACATATCTTGGTTCAGGTTGTTAACGACCATGGTCGAAATGTGTTCAATGGC
CTTCTTAGCCCGGGGCAACTATTAATCATACCACAGAACTATGTTGTTCTAAAGAAGGCA
CAACGTGATGGAAGCAAGTACATCGAATTCAAGACTAATGCAAACTCCATGGTTAGTCAC
ATCGCAGGAAAGAACTCAATCCTCGGCGCCTTGCCCGTTGACGTCATCGCCAGTGCATAC
GACATCTCTAGAACAGAAGCTCGAAGCCTCAAATTTAACAGGGAAGAGGAGCTGGGAGTA
TTCGCTCCTAAATTCAGTCTTAGTTTTCCTAAGGGCGAATAAGAGTCATCTTCAGAGTGC
ATGAGCTAATGTGAGAACTAGATCATGGACTAAAATAAACACATCACCGAGTGTGTAGCA
CTCTGGTGTTTCCATATATGGTCATATCAATAAGATATCAACAAAGGTCCATTGTGTTTC
ATATGTTTATCTTTCTGAAAAATTCATAAGGTTCGTTTCGCAAGTTGCATTTGTGAAAAA
AATAAAAAAAAA

Homology of Contig U35_1266 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g16830.1	501	1e-116	protein\|glutelin, putative, expressed
Brachypodium v1_2	Bradi4g28220.1	484	3e-118
Arabidopsis v10	None