barSeed - Barley Seed Development Database

Probe CUST_13845_PI390587928

Source Contig U35_19927

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13845_PI390587928	Hv_44K_v2	ATCTTAAGCTAGCTGATGACAGTACCCAGGAGTGTGAAGTGACCATGACAGAGAGCAATA	1098	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.415	0.622	1.100	1.474	1.075	1.086
Raw	42.070	89.710	150.741	322.533	81.219	91.592

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38537.1	1952	9e-22	1200 - 1254	100	55 / 55	plus	ABC12414
JLOC1	JLOC1_25065.1	2340	5e-22	1247 - 1301	100	55 / 55	plus
Harvest21	ABC12414	891	3e-25	532 - 591	100	60 / 60	minus	ABC12414
Harvest21	ABC12413	655	2e-22	114 - 168	100	55 / 55	plus
Harvest35	U35_19927	1689	3e-25	1099 - 1158	100	60 / 60	plus

Contig Sequence (1689 bp)

>U35_19927 1689 Hv_44K_v2
TTTTCTAACCTATCCCCTCTCTGTGCCACCACCCTCGTACCAAACGGGACAAAACAGAGC
ACACAACTTCCCCCACCAGACGCCGCAAACTTACCCCAAAATCCCCAATCAAGCTCGAAC
CGGATCCGACGCGCATCGAATCGAGTGAAATGAGCCGCCCAGACGACGGACATAGGTCTT
TCTTCCCCGTGGGGAACCCCTTCCGGGTCATCCTTCCAGGAGGGCCTCACCTGCCTCGGA
AGCTCCAGGCGCTGCTCAAGTCATATGAAGATGCCCTGGCCCTGAGCTTGAGGAAGCTAA
AGCCGGAGAATGCCTTGGAGGTCCTCACCCTGTCCTGGATGAGGCTTGCTGTGGATTGCT
TGTCAGAGCTGCATGCCAACATAGGCACCCTGATAACCGAGCTTGAGCTGCCTGTCTCGG
ATTGGGATGAGAAATGGGTGGACATTTACTTAAACAGCAGCGTGAAGTTGCTGGACATCT
GCATCGCGCTAAGCTCGGAGCTCGCTCGGTTGGACCAAGGGCAGTTGCTTGTGAAGTATG
TCCTGCATGTTTTGGATACCAAAAGTGGTGTGCCGTCATTGGAACAGCTCAAGCGAGCTG
AGGTATCACTTAAGGAGTGGATGGACAAAGTGGACACAGCGCGCCCAAGGCTCGACGGCT
GCTCAACGGCCTTGCAGGAACTTGCTGAGAGCCTTTGTCTGATGAAGGTCAAGAATTCTG
CCAAGGGGAAGGTCCTCATGAGAGCTTTGTATGGAGTAGAGTCTGTGACGGTCTTTACCT
GCAGCGTCTTTGTGGCTGCGCTGTCAGGTAGTCCCAAGCCATTGGTGGAGTTGCATATCC
CTCAGAAATTTGGTTGGTCACAAGCCTTCAATGATCTTCATGCTACCATCAGCGGGGAAG
TCAAAAGGCGATTATCCAAAGGAAGTGTTTCAGCTGTAAAAGAGCTGGAAGAAGTTGAAG
TATGTGCCAGAAAACTGCATGCATTGACTAGGACTGCTCAGCTTGAAGAAGAAAATGACA
ACCTGGCTTGTGCTGTCAGCCTTTCAAAGCAAACGATGATGCCGGACAGTACTGAACAGA
AAGGAGGCCCTGAGTGTAATCTTAAGCTAGCTGATGACAGTACCCAGGAGTGTGAAGTGA
CCATGACAGAGAGCAATACAGAAGAAGGAACACAGGAAGCTGAAATGATGCAGGAAGATA
ACACCCGCTGTGAGAATAAGCCGATCGCGCCTGAGAGTATCAGTAAAGATAACAACATAA
TTGGGACAAATGGCTTCGTAGACGAGAATATCGCCATCATTGCTGAGAGAACCAGTGTCT
CGGAAGGTAGAGAAGAGCTGCTGGACTGTATCTCCAGCATGTCGAAAAGCGCCGAGGGGC
TTCGGCTCGGGTTGGATTCCTTGTCAAAACGAGTCGGGGACTTCTTCCAGATCGTCCTTA
CAGGACGTGACGCATTGCTCTGCAATCTAAGGATGTCCGATGGAGCAAGCAAGGTCACCG
AGGTTAGGTCTTGATGCGCTACGTTTCTGCTGTGTAATGTATGTTCTCTTTTGGTGTAAA
ACATGTGTATATACGGCTTGGCAGCACATACTTGTAGACCGCTCTTCTGACCTGTGGCCT
CTGCTCAGCCTTACCGGAACTGTTGGGGCACCGCATCTCAGCGGCGATGTGCAAAAAAAA
AAAAAAAAA

Homology of Contig U35_19927 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g36950.1	457	0.0	protein\|DUF677 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi3g30530.1	470	0.0
Arabidopsis v10	AT2G46080.1	347	4e-84	CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF793) (TAIR:AT1G01550.2); Has 153 Blast hits to 139 proteins in 20 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 150; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr2:18948317-18949360 REVERSE LENGTH=347