barSeed - Barley Seed Development Database

Probe CUST_13841_PI390587928

Source Contig U35_1271

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13841_PI390587928	Hv_44K_v2	AAATATCTCGACAGTTCAGTGCTGGAAGGTCGTGTCATTACTGTTGAGAAGGCAAAGAGA	345	GeneList: darkgrey MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.361	0.457	1.533	2.425	1.252	0.881
Raw	69.336	119.292	399.232	987.764	184.435	139.836

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18525.4	1412	2e-24	934 - 993	100	60 / 60	minus	ABC03496
JLOC1	JLOC1_12821.1	4071	8e-25	456 - 515	100	60 / 60	plus
Harvest21	ABC49007	619	3e-25	329 - 388	100	60 / 60	plus
Harvest21	ABC03494	738	3e-25	346 - 405	100	60 / 60	plus
Harvest21	ABC03495	871	8e-21	337 - 388	100	52 / 52	plus
Harvest35	U35_1271	738	3e-25	346 - 405	100	60 / 60	plus
Harvest35	U35_1272	871	8e-21	337 - 388	100	52 / 52	plus

Contig Sequence (738 bp)

>U35_1271 738 Hv_44K_v2
CATTCGGCACGGGGGGCGGTGGTCGCAGGTCGGAACTGACGGAGGCAGAGGCGAAGACGA
AGACAGAGACTCGAGAGGCCTCGCAGCGGCGACGAATCAAAGATGTCGTATTCGAGGTAC
AGGAGTCGTTCAAGGAGTGTGGACTCGAGTGATGTTGAGAACCCTGGGAACAATCTCTTT
GTGACTGGTTTATCATCTCGTCTAACTGATCGAGATCTGGAGAAGCATTTCTCTACAGAG
GGAGAGGTGATTGATGCAAGTATTGTACTTGATCCATGGACAAGGGAATCACGGGGATTT
GGATTTGTTACCATGGCCAATCTTAAGGAGGCAGAACGCTGCATCAAATATCTCGACAGT
TCAGTGCTGGAAGGTCGTGTCATTACTGTTGAGAAGGCAAAGAGAAGACGAGGTCGAACC
CCAACACCGGGAAGGTACCTTGGCAGCAAATCATCGCGTCGAAGGAGGTATTCCCGAAGC
AGGTCACCTGTTAGGAGAGACCGTTACGGCTCACGCTACCCGCCCGAGCTAGAACGTTCT
TATTCTCCTTATCGCAGAGGACGATCATACTCTCGTCATGACAGGCATAGATCATACTCC
CCCTATGGAAGGAGGCCATCCTACTCCCCCTATGAAAGGAGGCCATCCTACTCTCCCTAT
GGCAGAAGGAGATCATACTCTCCTTCCGACAGGTCGGAGTCTCCCTACCACAGGCGTAGA
TCCTACTCACCCTACGAC

Homology of Contig U35_1271 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None