barSeed - Barley Seed Development Database

Probe CUST_13840_PI390587928

Source Contig U35_1272

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13840_PI390587928	Hv_44K_v2	ATTTATCTTTTGACACCTCAGTACCATGAATTATATGCTCGGAAAGTGAGCATGATGACA	811	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18524.3	5815	3e-22	3436 - 3494	98	59 / 60	minus	ABC03496 ABC22790 ABC23222
MLOC	MLOC_18525.1	3644	3e-22	1233 - 1291	98	59 / 60	minus	ABC03496 ABC23222
JLOC1	JLOC1_12820.1	6029	1e-22	3666 - 3724	98	59 / 60	minus
Harvest21	ABC03495	871	3e-25	812 - 871	100	60 / 60	plus
Harvest21	ABC03496	1425	5e-23	1030 - 1088	98	59 / 60	minus	ABC03496
Harvest35	U35_1272	871	3e-25	812 - 871	100	60 / 60	plus
Harvest35	U35_1273	1425	5e-23	338 - 396	98	59 / 60	plus

Contig Sequence (871 bp)

>U35_1272 871 Hv_44K_v2
GGAGAGGCGGTGGTCGCAGGTCGGAACTGACGGAGGCAGAGGCGAAGACGAAGACAGAGA
CTCGAGAGGCCTCGCAGCGGCGACGAATCAAAGATGTCGTATTCGAGGTACAGGAGTCGT
TCAAGGAGTGTGGACTCGAGTGATGTTGAGAACCCTGGGAACAATCTCTTTGTGACTGGT
TTATCATCTCGTCTAACTGATCGAGATCTGGAGAAGCATTTCTCTACAGAGGGAGAGGTG
ATTGATGCAAGTATTGTACTTGATCCATGGACAAGGGAATCACGGGGATTTGGATTTGTT
ACCATGGCCAATCTTAAGGAGGCAGAACGCTGCATCAAATATCTCGACAGTTCAGTGCTG
GAAGGTCGTGTCATTACTGTTGAGAAGGTATTGCCAAAAGATTGTTAACTCTGATATTTG
TCCATTCTCCTTCTATATAGAGTGGAACTATTATGTACAGATTAGCCTTCCAAGCTGAAT
ATTTGAGTGCTCTTCTTGTTTGAAGATTTTGTTGACAGCAGCAGGTTGATGCCCGCAGCT
GTATGGCATCAAATTCAAAAGATACACAACCTAAGATCGAAACAATGCTACCTCAACCAA
AGGGTTGTACGCCCACCGTTATTTTATTTTTCTGTATTATTTGTGTAGTTCAGATCCCCA
ATAATTTATCCAGTCTTGCTTTTGACATAAAACACAATTACTGATTTGGAGCCCCCTTCT
CCACCACAGGCAAAGAGAAGACGAGGTCGAACCCCAACACCGGGAAGGTACCTTGGCAGC
AAATCATCGCGTCGTAAGTTACTGTGACATGATTTATCTTTTGACACCTCAGTACCATGA
ATTATATGCTCGGAAAGTGAGCATGATGACA

Homology of Contig U35_1272 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None