barSeed - Barley Seed Development Database

Probe CUST_13839_PI390587928

Source Contig U35_1273

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13839_PI390587928	Hv_44K_v2	CCAGTGCGGATTTTTCTATAGGAATTCGATACTGCAATTTTCCTTTGTTTATAAGATCTC	1345	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18525.2	1533	2e-24	1461 - 1520	100	60 / 60	plus	ABC03496
MLOC	MLOC_18524.2	5305	2e-24	3294 - 3353	100	60 / 60	minus	ABC03496 ABC22790
MLOC	MLOC_18524.4	4938	2e-24	3294 - 3353	100	60 / 60	minus	ABC03496 ABC22790
MLOC	MLOC_18524.3	5815	2e-24	2427 - 2486	100	60 / 60	minus	ABC03496 ABC22790 ABC23222
MLOC	MLOC_18525.1	3644	2e-24	224 - 283	100	60 / 60	minus	ABC03496 ABC23222
JLOC1	JLOC1_12821.2	4169	8e-25	1570 - 1629	100	60 / 60	plus
JLOC1	JLOC1_12821.1	4071	8e-25	1472 - 1531	100	60 / 60	plus
JLOC1	JLOC1_12820.1	6029	8e-25	2657 - 2716	100	60 / 60	minus
Harvest21	ABC03496	1425	3e-25	21 - 80	100	60 / 60	minus	ABC03496
Harvest35	U35_1273	1425	3e-25	1346 - 1405	100	60 / 60	plus

Contig Sequence (1425 bp)

>U35_1273 1425 Hv_44K_v2
GGCCCAGGTGATTGATGCAAGTATTGTACTTGATCCATGGACAAGGGAATCACGGGGATT
TGGATTTGTTACCATGGCCAATCTTAAGGAGGCAGAACGCTGCATCAAATATCTCGACAG
TTCAGTGCTGGAAGGTCGTGTCATTACTGTTGAGAAGATTTTGTTGACAGCAGCAGGTTG
ATGCCCGCAGCTGTATGGCATCAAATTCAAAAGATACACAACCTAAGATCGAAACAATGC
TACCTCAACCAAAGGGCAAAGAGAAGACGAGGTCGAACCCCAACACCGGGAAGGTACCTT
GGCAGCAAATCATCGCGTCGTAAGTTACTGTGACATGATTTATCTTTTGACACCTCAGTA
CCATGAATTATATGCTGGAAAGTGAGCATGATGACACTTCATATCACATATGATTGTTGA
CATTTGATTATATGGTGATACCAGGAAGGAGGTATTCCCGAAGCAGGTCACCTGTTAGGA
GAGACCGTTACGGCTCACGCTACCCGCCCGAGCTAGAACGTTCTTATTCTCCTTATCGCA
GAGGACGATCATACTCTCGTCATGACAGGCATAGATCATACTCCCCCTATGGAAGGAGGC
CATCCTACTCCCCCTATGAAAGGAGGCCATCCTACTCTCCCTATGGCAGAAGGAGATCAT
ACTCTCCTTCCGACAGGTCGGAGTCTCCCTACCACAGGCGTAGATCCTACTCACCCTACG
ACAGGCGTCACTCACCCCGCTATGGTCATCGCCACCGTTCAAGATCCCCATACAGTTACA
GAAGGCGGAGGTCATGCTCCCATGACCGTTATGTTTCAGCATACTACAGCAGGCGCTATT
CTCCAAGGAACAGAAGACGGAGTTACTCTCGCAGCGTATCACCACGCAGGAGCTACTCCC
GTAGCTGCTCCCTGGCGTCAGAAGAATCAAGGAGCTGTTCTCCGCAGAAAGGATATGCTG
AAAGCAAGGCATCGCGCAGCAGGTCACCTGCGATTGCGAAGAGGCGTTCTAGAGAAAGCT
ATGCGCACAGCCGCAGTTCATGCTCGAGGTCCGTCTCCAGGGAGCGCTCAACCTCATCAA
GCACCTGATGGTTTACAAAGTGCCTTGATGACTTTGGATGTTTGTAAACAATGTGGATGG
TATGATCGTGTACCTAGTGAAGCAGCTGTATTTCGTCATCGTTAACATCTTAAATTGCAG
TCTGCTTCCATACTATAGGAGAAAAATGCAGAAAATTTCCTACAGATTGCCTATTCCACA
AGGATTTTATAGCATACTTCTACAACGGAAAAAACGCAGAAATTTTCATAAATATTGGCG
AGGTCATTTCTTTGTTTCAGATGACCCAGTGCGGATTTTTCTATAGGAATTCGATACTGC
AATTTTCCTTTGTTTATAAGATCTCTAACTCAAACCTCATTTTAT

Homology of Contig U35_1273 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None