barSeed - Barley Seed Development Database

Probe CUST_13836_PI390587928

Source Contig U35_1276

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13836_PI390587928	Hv_44K_v2	CGGTTGTGTACATCTTTCATGCTTGACAAGCAACATTCTTATGTGTAGTTAAGAAGTCAC	1046	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.696	4.312	1.123	0.708	0.270	0.388
Raw	969.534	1494.616	315.792	338.494	41.104	67.400

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356973	3297	2e-24	3195 - 3254	100	60 / 60	plus	ABC04861
MLOC	MLOC_61959.1	1602	2e-24	1269 - 1328	100	60 / 60	plus	ABC04861
JLOC1	JLOC1_40522.1	1630	8e-25	1291 - 1350	100	60 / 60	plus
Harvest21	ABC04861	1166	3e-25	1047 - 1106	100	60 / 60	plus	ABC04861
Harvest35	U35_1276	1167	3e-25	1047 - 1106	100	60 / 60	plus

Contig Sequence (1167 bp)

>U35_1276 1167 Hv_44K_v2
CAACCTACCACGTCTCCCCGCCCGCGCCCGCGCCAGCTCCGGCTTTGCCCAGGCACGTCC
GTCGACACAATTCCGATAGTCCAGCCAGCCAGCCATTCATCCGCTGCGATCTCTCTCCCT
TATTAGTACGCCCCCACCCTCTCCCTCTCCTGCCCACAGTCCCACTCCCACGACACCAAC
AGCTGCGCCAACAGCAACAGCCCAGCTCCCCACTACCAGACGTACCACGTACAGAGCTTA
GCACCACCCATGGCCGCGGAGGAGCCCAAGAAGGTGGAGGTGGAGGCGGCGCCGGAGCCG
GAGCCCGCACCCCCGGCGGCGGAGCCTGAGGCCCCCGCCAAGGACGTCACCGAGGAGAAG
GCCGTCATCCCCGCGCCCGCGCCCGCCGCCGACGAGGAGAAGCCGCCCGTCGACGACTCC
AAGGCCCTCGTCGTCGTCGAGAAGGTTGCAGATGAACCTGTTGCTGAGAAACTCACAGAT
GAGAAAGCTGCACACGGCGGCTCAAACGACAGAGACCTCGCTCTTGCAAGGGTGGAAAGC
GAGAAGAGGAACTCTTTAATTAAAGCATGGGAGGAAAATGAGAAGACAAAGGCTGAGAAC
AAGGCTACTAAAAAGGTATCTGCTATTCTCTCATGGGAGAACACCAAAAAAGCAAACATA
GAAGCTCAACTGAAGAAGATTGAGGAGCAATTGGAAAAGAAGAAGGCTGAATACGCCGAG
AAGATGAAGAATAAGGCCGCAATGATCCACAAGGAAGCCGAAGAGAAGAGAGCGATGGTC
GAGGCAAAGAAAGGGGAGGAACTCCTCAAGGCCGAGGAGATGGCCGCCAAGTACCGCGCC
ACCGGCAACTCTCCCAAGAAAGTCATGGGATGCTTTGGGGCCTAAAGTAAAAACGCTCCT
TCTTCGCAAATGGAGCAAGAGTGAATGAAGTGTTTATCAGTGGTTGCTTGCTTCCTTGTT
TCTTTCATCCGTCCAAGTTGTGTAGTGTGCCTTGTGTGTAAAGTCTGCCGTTTCTGTATA
TACATATTGCTCCCAGGACAGGTGTTCGGTTGTGTACATCTTTCATGCTTGACAAGCAAC
ATTCTTATGTGTAGTTAAGAAGTCACATTTGTTATTACTCTTGACATTTAAGCAGTCGAT
TTTTGGTCTAAAAAAAAAAAAAAAAAA

Homology of Contig U35_1276 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None