barSeed - Barley Seed Development Database

Probe CUST_13834_PI390587928

Source Contig U35_1279

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13834_PI390587928	Hv_44K_v2	GGGGGCTCTAAGAGGAACAAGCTAGTTACTGTACATAATTTTGTAGTCACATCAATAAAT	1054	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.558	2.342	1.135	0.724	0.319	0.329
Raw	980.286	1386.813	593.684	601.807	94.727	106.168

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359281	2275	2e-24	1940 - 1999	100	60 / 60	plus	ABC12113
MLOC	AK364513	2267	2e-24	2005 - 2064	100	60 / 60	plus	ABC12113
MLOC	MLOC_42.2	1917	2e-24	1747 - 1806	100	60 / 60	plus	ABC12113
MLOC	MLOC_42.1	1936	2e-24	1666 - 1725	100	60 / 60	plus	ABC12113
JLOC1	JLOC1_31.2	1973	8e-25	1657 - 1716	100	60 / 60	plus
JLOC1	JLOC1_31.1	1982	8e-25	1666 - 1725	100	60 / 60	plus
Harvest21	ABC12113	1194	3e-25	1055 - 1114	100	60 / 60	plus	ABC12113
Harvest35	U35_1279	1194	3e-25	1055 - 1114	100	60 / 60	plus

Contig Sequence (1194 bp)

>U35_1279 1194 Hv_44K_v2
CTTTAAGNCATCACCTTATCCCGGACAANATTCTTTGCAACGGGTTGTCATATTTGGGGA
CATGGGGAAGGCAGAAGCAGATGGTTCCAATGAGTACAATAATTTCCAGCCAGGCTCGCT
AAACACTACTAACCAGATCATTAGAGACCTGGAAAACATTGACATGGTAGTCCACATCGG
GGACATTTGCTACGCGAACGGTTATTTGTCGCAGTGGGATCAGTTCACTGCACAGATAGA
ACCGATTGCTTCAACTGTGCCATACATGGTTGGCAGCGGTAATCATGAGAGGGACTGGCC
TGGAACTGGTTCCTTCTATGGAAATCTCGACTCTGGTGGAGAATGCGGCGTTCCTGCACA
AACTGTTTTCTACACTCCTGCTGAGAACCGTGCAAAATTTTGGTACGCGACCGACTATGG
CATGTTCAGGTTTTGTATTGCTCACACAGAAGAAGATTGGAGGCCAGGGACCGAGCAGTA
TAAGTTCATCGAGCACTGCCTGTCGTCTGTTGATAGGCAGAAGCAGCCATGGCTCATCTT
CCTTGCACACCGTGTTCTCGGGTACTCATCCAACTCTTACTACGGATTCGAAGGCACGTT
TGAGGAACCAATGGGACGAGAAGCGCTGCAAGAGCTCTGGCAGAAGTACAAGGTCGATCT
TGCCTTCTACGGTCATGTCCACAATTATGAAAGGACATGTCCAGTGTACCAGAGCCAGTG
TGTTGTTAATGCATCCAATCACTATAGCGGCCCGTTCCAGGCAACGACGCATGTGGTTGT
CGGTGCCGCCGGTGCAAGCCTTTCAGACTTCACCACTTCGAAGATCCAATGGAGTCATTT
CAGAGATTTCGACCATGGTTTCGGCAAGCTCACGGCTTTCAATCATTCATCCTTGTTGTT
TGAGTACAAGAAGAGCCGTGACGGCAATGTGTATGATCATTTCACGATCTCGCGCGACTA
CCGAGATGTCCTTGCCTGCTCCGTCGACAATTGCCCTAGGACTTCGCTGGCTTCCTGAAG
GTCCAATACTTCCAGATGGGGGGATCGATCGACGGGGGGCTCTAAGAGGAACAAGCTAGT
TACTGTACATAATTTTGTAGTCACATCAATAAATGGTTTTGCTTCAACAAAAATAGCACA
AGGGTTATTACTAAATTTTGAATGCATCTATCTGAAAATAGAAATTCGAAATTC

Homology of Contig U35_1279 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os12g38750.2	608	protein\|nucleotide pyrophosphatase/phosphodiesterase, putative, expressed
Brachypodium v1_2	Bradi4g03787.1	617
Arabidopsis v10	AT5G50400.1	611	\| Symbols: ATPAP27, PAP27 \| purple acid phosphatase 27 \| chr5:20523575-20526231 REVERSE LENGTH=611