barSeed - Barley Seed Development Database

Probe CUST_13833_PI390587928

Source Contig U35_19930

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13833_PI390587928	Hv_44K_v2	GTGCGGATCTATATGAAGGGCAAAATGTGTACCATTCAATAAAATGTTGGGCTAAAATGT	508	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.049	1.240	1.155	0.999	0.426	0.450
Raw	6339.727	11753.297	9673.900	13172.590	1974.317	2234.453

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52518.2	1878	3e-22	85 - 143	98	59 / 60	minus	ABC15563
MLOC	MLOC_52518.1	1810	3e-22	102 - 160	98	59 / 60	minus	ABC15563
JLOC1	JLOC1_33661.1	1864	1e-22	1599 - 1657	98	59 / 60	plus
Harvest21	ABC15563	566	3e-25	23 - 82	100	60 / 60	minus	ABC15563
Harvest35	U35_19930	590	3e-25	509 - 568	100	60 / 60	plus

Contig Sequence (590 bp)

>U35_19930 590 Hv_44K_v2
TACCATTAGCGACGACCGTGCTGCCAATCGCTTCCCTACACCACTGGAGGTATCGGATAA
AGATGATGTATCAGTTGGCAGGATCCGTCAGGACTTGTCGCAAGATGATAACAGAGGGTT
GGAGTTATTTGTCTGTGGAGACCAGATACGTAAAGGTGCGGCGCTGAACGCTGTCCAGAT
TGCCGAAATGCTACTGAAGTGACCGCCTTTCTACCATTGTCTCATGTGCCACATTGCTCT
ATCCATTGATGGATTGATGTACTCTAGTCATTTTGAGCTCAGTTTTGGTCTATCAACCTA
GCAGAAGGAGCGTAAGACGGGTTTTAGTCATCTGCTGCACGCAGACGTGCAGCCAGAAGT
TGAGAAAAGGAGCTTTTTTGCTTGTTTGGATTTTGCCTTAGGTTGGTCTTTCTGGTGTCA
ATTGCAAGTTTGTCGTTCGTCTGTGGACAATGGGTCGAGGTGAAACCTGGTCTGATGTAA
CTTTACCACCGAGATAACGAGGCATCCTGTGCGGATCTATATGAAGGGCAAAATGTGTAC
CATTCAATAAAATGTTGGGCTAAAATGTTGTAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_19930 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None