barSeed - Barley Seed Development Database

Probe CUST_13831_PI390587928

Source Contig U35_19933

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13831_PI390587928	Hv_44K_v2	CCCTGATGAGCATTTTTCTTTCGGTTACTTGAACATGATGAAGGATAACCTGACAAAAAA	1098	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.714	1.475	1.002	0.885	0.405	0.390
Raw	476.489	629.061	384.190	530.016	83.214	90.371

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7906.1	1384	3e-22	1282 - 1337	100	56 / 56	plus	ABC11845
JLOC1	JLOC1_5233.2	1313	1e-22	1185 - 1240	100	56 / 56	plus
JLOC1	JLOC1_5233.1	1361	1e-22	1233 - 1288	100	56 / 56	plus
Harvest21	ABC11845	1169	3e-25	1099 - 1158	100	60 / 60	plus	ABC11845
Harvest35	U35_19933	1169	3e-25	1099 - 1158	100	60 / 60	plus

Contig Sequence (1169 bp)

>U35_19933 1169 Hv_44K_v2
GCTGCGCCTGGCCTGACCGCCGCGAACAGATCCTGGGATCTCTCCTCCCTCCGACCCTCC
CTCTTCGTCTCTCGTTTCCCTCTCTTTCGGTCCCTACCCCGACGCCCGCTCGACCTCGGT
CCAAGTCCGGCAGCCAAGGCGACAGCGACGGCAAGGGCATTTTAAACGGTGGCACACCAA
TTTGGGCAAATCATCAAAGTTGCACCAATTTCGGGGCAAATGATAAAAAGTCCTGTTTCA
CCGTCTCAATCCCACATGGCTGTAGCGGCGGCGCAGCTCCGTGGATCGGCCATGGTCGCT
CGGAGGCATGGAGCCTTCAGAGTCCCCTCCTCCTGCCGGTGGCCACGTCACCCTCTCGCC
GGTTCACTAAAGTTTTCAGTTTCTACCAGTGGAGTGAGTGGGAAGCTGTTTGGTTTTGGT
GCCAAAATTGCAAAAAAATGTGTAAATGAGAACACTCGGGCTGAAGAGTTGAATTCGAGA
TCAGATCAAGCAGGCGAACTTGTAGCACCAGTTGAAGATGTGACTCCCCAAAAGAGGAGC
TCTAAGATCCATGATTTTTGTTTTGGGATTCCTTTCGGTGGTCTCTTGTTCTGCATGGGG
CTTCTAGGCTACTTTTTCTCTAGGAGTACTGTAAGTCTTGTCCTAGGTGTTGCACCTGGG
CTTGCTACGCTCTTTCTTAGTACCCTCAGTTTAAACTTTTGGAGGAGTGGAAGATCCAGC
TTCCTGTTTATATTGGGCCAAGCAGCAATTTCTGCTGTCCTTGCATGGAAGTATTCTCAT
GCATACTTACTGACGAATAGAATTCTTCCTTGGGGCTTCTACGCTTCACTGAGCACTGCG
ATGGCTTGTTTCTATGTGTACGTGCTGCTCGCCGGAGGAAATCCACCACCCAAGAAGTTG
GCCCCGGCACCATCGACCTAGAGCAGGGAGCAGGCATACATTTTTTATCCTAGCTTAATT
TGGCCTTTGTGCTCCATAAAATGCTGCGACTACTAGCACAGAAGAGTTATGTCTTCTTCT
ATATTTGTATGTTTCCTAATAGTAGGATTGAGGTAACATCGAGCAAATAATACTGGCAGG
ATGGTTGTAACGATCCAGCCCTGATGAGCATTTTTCTTTCGGTTACTTGAACATGATGAA
GGATAACCTGACAAAAAAAAAAAAAAAAA

Homology of Contig U35_19933 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g39450.1	224	8e-91	protein\|expressed protein
Brachypodium v1_2	Bradi5g13034.1	246	2e-84
Arabidopsis v10	None