- Probe CUST_1382_PI390587928
- Source Contig U35_42028
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1382_PI390587928 | Hv_44K_v2 | ACCCTCCTCACAGCATGGATGCTTTGGAAGCACCGCAACTCATGTGTGTTCGACGGCGAA | 183 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.391 | 1.568 | 1.291 | 0.818 | 0.684 | 0.749 |
| Raw | 89.949 | 149.588 | 114.855 | 104.596 | 32.887 | 40.352 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK363651 | 1459 | 2e-24 | 1150 - 1209 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_81763.1 | 236 | 2e-24 | 63 - 122 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_80869.1 | 310 | 2e-24 | 240 - 299 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_75645.1 | 263 | 2e-24 | 14 - 73 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_36201.1 | 196 | 2e-24 | 75 - 134 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_31450.1 | 298 | 2e-24 | 16 - 75 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_6976.2 | 3374 | 2e-24 | 3309 - 3368 | 100 | 60 / 60 | plus | ABC12716 |
| MLOC | MLOC_4933.3 | 1135 | 2e-24 | 104 - 163 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_4933.2 | 1126 | 2e-24 | 393 - 452 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_4933.1 | 1010 | 2e-24 | 768 - 827 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_4934.1 | 2743 | 2e-24 | 1774 - 1833 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_65153.1 | 1429 | 7e-23 | 1311 - 1370 | 98 | 59 / 60 | plus | None |
| MLOC | MLOC_32651.1 | 334 | 3e-21 | 273 - 332 | 97 | 58 / 60 | minus | None |
| JLOC1 | JLOC1_4594.1 | 3364 | 1e-22 | 3309 - 3364 | 100 | 56 / 56 | plus | |
| JLOC1 | JLOC1_45580.4 | 2373 | 5e-22 | 2319 - 2373 | 100 | 55 / 55 | minus | |
| JLOC1 | JLOC1_45580.3 | 2259 | 5e-22 | 2205 - 2259 | 100 | 55 / 55 | minus | |
| JLOC1 | JLOC1_45580.2 | 2398 | 5e-22 | 2344 - 2398 | 100 | 55 / 55 | minus | |
| JLOC1 | JLOC1_45580.1 | 2364 | 5e-22 | 2310 - 2364 | 100 | 55 / 55 | minus | |
| Harvest21 | ABC37375 | 248 | 3e-25 | 184 - 243 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_42028 | 248 | 3e-25 | 184 - 243 | 100 | 60 / 60 | minus |
Contig Sequence (248 bp)
>U35_42028 248 Hv_44K_v2 GGACAAGGAGGCTACAGGGGCTCAAAAGAAAGAAAAGAAAAGGAAAAGGAAAGAAAGGCC TGCGCAAGACTAGTGCACGTCCCAGGTAGGCGGCACAATCGTCCCAAGGCCGGTGGCCCC AGCCCGAATCCAAAGGGAGGCTTCCTCTCTGATCTTTGCCGAAAGCACGGCAGTGGAGGG CCGTTCGCCGTCGAACACACATGAGTTGCGGTGCTTCCAAAGCATCCATGCTGTGAGGAG GGTTGCCG
Homology of Contig U35_42028 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |