barSeed - Barley Seed Development Database

Probe CUST_13827_PI390587928

Source Contig U35_19937

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13827_PI390587928	Hv_44K_v2	ACTATCATTGATGTATCATCACGCCAGCCTTCTCTTCTTTTCTTGTAACCATTTGGTTCA	1409	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56258.1	3201	2e-24	3103 - 3162	100	60 / 60	plus	ABC14543
MLOC	MLOC_56258.2	3206	2e-24	3062 - 3121	100	60 / 60	plus	ABC14543
JLOC1	JLOC1_36375.1	3305	8e-25	3061 - 3120	100	60 / 60	plus
Harvest21	ABC14543	1538	3e-25	1410 - 1469	100	60 / 60	plus	ABC14543
Harvest35	U35_19937	1538	3e-25	1410 - 1469	100	60 / 60	plus

Contig Sequence (1538 bp)

>U35_19937 1538 Hv_44K_v2
GAAAGAATGTAGTGATCTTGCAAAAGTAACAGTGAATCTTTCAGAGTGGTCCAATTCAAG
TTCTGGACTTGATTGTAACCTTCAACCTTGTGCTCTTGCTAATAGCTTTCCGCAGCCACA
TGGGCAGTTCTACGCAATGTCTGGTTTCTATGTGGTTTTCAAATTTTTCAATTTGACTCC
TGATGCTACTCTCGTTGATGTTCTAAAAAGAGGTCAGGAATTTTGTGAAAAACCATGGGA
TGTTGCAAGGAGTAGTGTTCCACCACAGCCTTTCATTGAGCAGTATTGCTTCAGGTCTCC
TTATATTACATCACTTCTGAGAGAGGGGCTGCAGATAAAAGATAACCAAGTGATAATTGG
TTCAGGTAGTATCACTTGGACTCTTGGTGTTGCTTTGCTAGAGGCTGGGCAGGCACTGTC
GAAGATGGATATTCAAGGATACATTTTACTACACCGGGAGATAAACCCAAATATTCTTAT
TGTATTGTTTCTGATTTCAATCGTGTTGGTCATATGTGCAATATTGTGCGTTAGCAATTC
CATCCCAAGGTCATTCCGCAAATCCTATTTGCCGCTTTTTAGGCCGAACAACGGAGGTAG
TTCTGCGCTTGGTATGGGATCGCCATTCAGATTCCATTTATGGAGACATATTAATTCAGG
TGATGGAAGAACAAAGACACCATTGAGCCCTACTGTTGCTGGGTCAGAACCCCATCCATT
CAGCATGACACATGGATTAGGCGGCAGCAGCGTCCAGCTTATGGAATCTTCCAGGCAATC
GTTGGGTGTATATCATAGCTATTCAGTTGGGAGCTTGGGTCAGATGCAGTTTTCTAGCGG
AAGAGGTCAGACAACACTTCAGAGCCGGAGATCCCAGTCGAGAGAAGATCTCACTTCTTC
ATTAGCTGATCTTCATGTTCAAAAGGTGTAGAGCATTACATTTCAGGATGACATGACTAG
TATGTGATCCCATGCCATAACAAACTCCATGTAAATAATAGCGCTCCCGTCTGCACGATT
TCTTCTTCTCTAGCCAGAAGTCAATTTTGTCGGTGCACTGACAATTCAAAGGTTTAGGAT
TCACGAAATTTAAAGTATATGACTTGGTGCCTCATGGACATGATACATCCATCCCTTGCA
ATGTACTGGTACCATTCATGCGATAGAATCATGCCATACAAAAAGATGACCTTGCAAGCA
GCTCGGTGTTGTACCAGAAGAAATGTTACATGGTTTGCTGATGCGGTTGGCCATGGCCTT
GGAAGGTTACCAGCTCAGCTCTGTAGCCCCAAACGTGAAGGCTACCAGATGATGATGATA
TCACTGCATCCAGCCAGGATGTATACTCTTCAAAGGTTCTTAACTATTATTTTCGTTTTA
CACATAATAAGATAGCTGTGTTCTCGTGTACTATCATTGATGTATCATCACGCCAGCCTT
CTCTTCTTTTCTTGTAACCATTTGGTTCATATATACTTATTTTCATGTGGTCCTTATATG
AATCTGTTTTGGTTACAAGATTTTTCGTAAAAAAAAAA

Homology of Contig U35_19937 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g21000.1	703	1e-173	protein\|nucleoside-triphosphatase, putative, expressed
Brachypodium v1_2	Bradi1g55820.1	706	0.0
Arabidopsis v10	AT4G19180.1	740	2e-107	GDA1/CD39 nucleoside phosphatase family protein \| chr4:10485518-10487868 REVERSE LENGTH=740