barSeed - Barley Seed Development Database

Probe CUST_13825_PI390587928

Source Contig U35_19938

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13825_PI390587928	Hv_44K_v2	CAATGATCATATTTCAGTACTCCGTAGTTCTTTTTGAACAAGCGTACACAACTCAGTTTT	1455	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60741.1	883	2e-24	808 - 867	100	60 / 60	plus	ABC10644
MLOC	MLOC_60740.3	1192	2e-24	1117 - 1176	100	60 / 60	plus	ABC10644
JLOC1	JLOC1_39636.2	888	8e-25	721 - 780	100	60 / 60	plus
JLOC1	JLOC1_39636.1	1186	8e-25	1019 - 1078	100	60 / 60	plus
Harvest35	U35_19938	1585	3e-25	1456 - 1515	100	60 / 60	plus

Contig Sequence (1585 bp)

>U35_19938 1585 Hv_44K_v2
GAACTTGGGAAACACTTGAAGATTCAAGTCATGGTCACTACTGGAGGAACAAGCCTAAAG
GATGATATTGTCCGTCTTTATCAACCTGTGCATTTACTTGTGGGGACGCCTGGTCGAGTT
TTGGACCTTACAAAGAAAGGCATTTGCATTCTGAAGGACTGTTCAATGCTTATTATGGAT
GAGGCAGACAAGCTTCTTTCTCCCGAGTTCCAACCTTCTGTGGAGCAGTTAATTCGATAC
CTTCCATCGAGTCGACAGATTCTAATGTTCTCTGCAACATTCCCGGTCACTGTCAAGGCT
TTCAAGGACAAATATCTGCCTAAACCCTATGTTATTAATCTTATGGACGAACTTACATTG
AAGGGAATTACCCAGTTCTACGCTTTTGTTGAAGAAAGGCAGAAAGTCCATTGTCTGAAC
ACTCTTTTTTCCAAGCTGCAAATTAATCAATCTATAATATTCTGTAACTCCGTAAATCGT
GTTGAACTACTGGCGAAGAAGATCACAGAGCTTGGTTACTCTTGCTTCTACATCCATGCT
AAAATGCTGCAGGATCATCGTAATAGAGTATTCCATGATTTCCGTAATGGCGCATGCAGG
AACCTTGTGTGTACAGATCTTTTTACAAGGGGAATAGATATTCAAGCTGTTAATGTTGTT
ATCAATTTTGATTTCCCCAAGAACGCTGAAACCTATCTCCACAGGGTTGGTAGATCTGGG
AGATTTGGCCACCTTGGCCTAGCTGTGAATCTGATCACCTACGAGGATCGGTTTAATTTG
TATCGGATTGAGCAGGAGCTTGGAACTGAGATAAAACCTATACCTCCTCAGATAGACCGG
ACGATATATTGCCAATAGTTGTCTGGCAGATTAATCTTGTATGCCCCACTCTGGGAGTAA
CAAGACAACTTGTGTAAATAGCAGCTCATCAGGATTCATTTGTCTGATCTTTATGGTGTA
TCTTAAGTTGGTTTGGGGCACTCTGTGACTGGTGAAATTGTAGCTAGCTCATCTAATTTT
CAGCGGACCATTTGTGCGGATGTATCATGGCTAAGCCAAAGCTTCCCATTACTCTGACAA
TAGTTGATGTTGCTAACCAGGTCCCTGTTCCGAGACTGTTTTCCCTAAAACTGTAAGATC
TCTTTTCTTTTGACAATGTATTGGCTGGCTAGCTTTTTCTACAGGTCATTCTGTGAGTTA
CGTGACCTTGGCGTGAACAGATGGATCATTCCACCTGGCCAAGCTGTCAAGACGTATCCG
TGTCAAGATCTAGGGATCGGATTGGTGTTCAAGGAGTGTTTGTTCGGTTCAAGATTTATG
TTTCCTTTGCTCTCTACATGAGAGCGTGCCACACAATGTTCTTGTTCTGGTCGCTTGCTC
TCAAGCGAAGGTGGATGTACTGGCAATTTAAGTTGAACCATTATATTTGAAGAAATATAT
TTGCTGATGCTTCTTCAATGATCATATTTCAGTACTCCGTAGTTCTTTTTGAACAAGCGT
ACACAACTCAGTTTTTTTTATTACCAAAGCATAACTCAGTTGCTAATGTGTCTCTGGATG
CATTTGTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_19938 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g42860.1	509	protein\|DEAD-box ATP-dependent RNA helicase, putative, expressed
Brachypodium v1_2	Bradi5g16700.3	496
Arabidopsis v10	AT4G00660.2	505	\| Symbols: RH8, ATRH8 \| RNAhelicase-like 8 \| chr4:274638-277438 FORWARD LENGTH=505