barSeed - Barley Seed Development Database

Probe CUST_13818_PI390587928

Source Contig U35_831

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13818_PI390587928	Hv_44K_v2	AACTTTCAATTCTGGGTACTGCTAAGTTTCTCTGCACTCTATGGTGCGCCGTGTGTGTTT	750	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_1397.2	811	2e-24	751 - 810	100	60 / 60	plus	ABC02686 ABC02688
Harvest21	ABC02688	860	3e-25	74 - 133	100	60 / 60	minus	ABC02688
Harvest21	ABC02686	1016	3e-25	751 - 810	100	60 / 60	plus	ABC02686
Harvest35	U35_833	762	3e-25	630 - 689	100	60 / 60	plus
Harvest35	U35_831	1016	3e-25	751 - 810	100	60 / 60	plus

Contig Sequence (1016 bp)

>U35_831 1016 Hv_44K_v2
GGCTCGCTCGCTTGTAGCACAGCGTCAAGAAACTCGCGGGGCAGCGGCAGGATGGGAGAG
GAGTGCAAGGGCGCGGGGGCGGACGTGAACGCCGGCGTCGACCCGGCGGCGATCGAGAAG
CTGTACGAGGACGTGCCGCCGATGCCGCTGATGGCGCTGAACCACATCTCCCGCCTCTGC
AAGTCCGTCGACGCCTCCGTCCGGTTCTACGTCAAGGCGCTCGGCTTCGTCCTTATCCAC
CGCCCTCCCGCGCTCGACTTCTCCGGCGCCTGGCTGTTCAACTACGGCATCGGGATACAT
CTCGTCCAGAGGGACGACGCACGGCGAGCCGCCGACGTCAACCCCGGCGAGCTCGACCCC
ATGGACAACCACATCTCGTTCCAGTGCGAGGACATGGGCGCGATGGAGAAGAGGCTGAAG
GAGATGGGGATCAGGTACATGAAGAGGACCATCAACGAGGAGGAGGGTTCGCCGATCGAC
CAGCTCTTCTTCAAGGACCCAGACGGCTTCATGATCGAGATCTGCAACTGCGAGAACCTC
GAGCTCGTCCCCGCCGGCGCCCTCGGCCGCCTCAGGCTGCCCCGCGACCGCCACAACCCG
CCGCTCCGGATGGACGGCGCCGACGAGTAGCACCATGCCAAACGCGTAACACGGGGCCTG
CGCGCGTGTGCGTGGCTAAGCAAGTTACCTTTTAGTATTTATAGAATGAGGGAGTTAGCT
AGTGGTGTGACGAACTGCTGTCACGTTTTAAACTTTCAATTCTGGGTACTGCTAAGTTTC
TCTGCACTCTATGGTGCGCCGTGTGTGTTTGTCAATCAGCTGGTCGCTGCACCCTGATTT
TCTGCTGGAAAAAAAAAGATTCCGCTTCGCACGATGCTCTGGGAAAGAAAAACTGCAGCA
TTAATTTTTTTCTATGTAGGTTAGTGCCGCGTCTCAAAATAAATATCATAATTTTGTACT
CCTTTAGTTTTAAAATAACTGTCTCAACTTTATACTANNAAAAAAAAAAAAAAAAA

Homology of Contig U35_831 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g46360.1	220	3e-116	protein\|glyoxalase family protein, putative, expressed
Brachypodium v1_2	Bradi1g19200.1	207	2e-117
Arabidopsis v10	AT2G28420.1	184	8e-69	Lactoylglutathione lyase / glyoxalase I family protein \| chr2:12157946-12158500 FORWARD LENGTH=184