barSeed - Barley Seed Development Database

Probe CUST_13817_PI390587928

Source Contig U35_832

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13817_PI390587928	Hv_44K_v2	TATGTGATGACGTGTTGATGGACTATGATGCACTAAAGGCTGTACAGTCCGGATTAGGCA	1232	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.285	0.482	1.302	2.079	0.988	1.075
Raw	457.014	1237.414	2836.823	7402.927	1201.466	1415.945

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37893.1	1915	2e-24	1211 - 1270	100	60 / 60	plus	ABC02688
MLOC	MLOC_37893.2	1826	2e-24	1164 - 1223	100	60 / 60	plus	ABC02688
JLOC1	JLOC1_24585.1	2166	8e-25	1286 - 1345	100	60 / 60	plus
Harvest21	ABC02688	860	3e-25	766 - 825	100	60 / 60	minus	ABC02688
Harvest21	ABC02687	2087	3e-25	1233 - 1292	100	60 / 60	plus
Harvest35	U35_832	1894	3e-25	1233 - 1292	100	60 / 60	plus

Contig Sequence (1894 bp)

>U35_832 1894 Hv_44K_v2
GTCTGCAGGNAATTCGGTCACGAGGAGCTCGCCCCGCTTCTCCTCCCCACAACACAACAG
TCTCTCCCTGTTTTTTTTCTTCCAAATCCGACGGACTCGAGGCCAACCGGAGGCGGAGAT
GGCGTTGCGGTGGGCGCTGTTCAGATCGGCCGAGATCTCTCCCGGTCGCAAGGCTGCATT
TGAGTACTTGCATTCTCTATCAAGGGCACAGCCTACTCGTTCTCCCTCGTGTGCCGACCT
GTATCCTGCTGGCAGATCATTCAGCACCCAGGCTGCTACTACATCAAGCACACCACAGCC
TCCACCACCACCCCCACCTCCAGAGAAGACTCACTTTGGTGACCTTAAAGATGAAGATCG
CATTTTCACCAACCTCTATGGTCTTCATGATCCTTTTCTGAAAGGTGCGATGAAGAGAGG
TGACTGGAATAGAACCAAGGATTTAGTGATTAAAGGGGCAGACTGGATAGTGAATGAAAT
GAAAAAATCAGGTCTGCGAGGGCGCGGAGGTGCAGGTTTTCCTTCTGGCCTCAAATGGTC
CTTCATGCCCAAAGTCTCTGATGGACGTCCTTCTTATCTTGTTGTTAATGCTGATGAGAG
TGAACCAGGAACTTGTAAAGACAGGGAAATCATGCGTCATGACCCCCACAAGCTTCTGGA
AGGGTGCCTTATTGCTGGAGTTGGAATGAGGGCATCAGCTGCTTACATCTACATCAGAGG
TGAATATGTGAATGAGCGTCTGAACCTTGAGAAAGCTCGGCAGGAAGCATATGCATCAGG
ACTTCTTGGTAAGAACGCTTGCGGGTCAGGCTATGATTTCGATGTGCATATACATTTTGG
TGCTGGTGCGTACATTTGTGGTGAAGAGACTGCCCTACTGGAGAGCCTTGAAGGCAAGCA
GGGTAAACCAAGGCTGAAACCACCTTTCCCTGCCAATGCTGGGCTGTATGGCTGCCCCAC
AACTGTCACAAATGTTGAAACTGTTGCTGTGTCTCCAACAATTCTTAGGCGTGGCCCAGA
ATGGTTTGCGAGTTTTGGACGCAAGAATAACTCGGGAACAAAACTGTACTGTATCTCAGG
TCATGTGAACAAACCTTGTACTGTTGAGGAGGAAATGAGTATACCTCTGAAGGAATTAAT
CGAGAAGCACTGCGGAGGTGTGAGAGGAGGATGGGACAACCTGCTTGCAGTTATCCCTGG
CGGTTCGTCTGTTCCTCTTTTGCCAAAGCACATATGTGATGACGTGTTGATGGACTATGA
TGCACTAAAGGCTGTACAGTCCGGATTAGGCACTGCAGCAGTTATGGTGATGGACAAATC
CACAGATGTAGTTGATGCGATTGCTAGACTGTCATACTTCTACAAGCATGAGAGCTGTGG
GCAGTGCACGCCTTGCCGTGAGGGTACAGGATGGCTCTGGATGATCATGGAGAGGCTCAA
AGTGGGTAATGCGAAGCTGGAAGAGATTGATATGCTTCAGGAGGTCACGAAGCAGATTGA
AGGCCACACGATCTGTGCCCTCGGGGATGCTGCAGCATGGCCTGTGCAGGGTCTTATCAG
GCACTTCAGACCTGAGTTGGAGAGGAGGATCCGCGATCGTGCTGATAGGGAGCTGCTGAT
GGCAGCTTCTGCATAAGCACCACTTCTTGTTTGCTGATTTTATTCACAGAAATAATGCAA
ACTGGTGAAGCTCATTTCTGCACATGCAGATGTAGCTTACCTTATTGGTTGAACCTTTTA
TGTCGATGTTTATTTGATGCACTGATGAAGCCAGTGTACTTTGATGGCGAAGTGGAAACG
AATATGAAGGATTGTACCTTGCATGTTACATGAAGCTGTTTTTCTTCTTTAATGTTATAA
ATAATGACTTGCTTCTAAAAAAAAAAAAAAAAAA

Homology of Contig U35_832 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os07g45090.1	505	protein\|NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor, putative, expressed
Brachypodium v1_2	Bradi1g53800.1	536
Arabidopsis v10	AT5G08530.1	486	\| Symbols: CI51 \| 51 kDa subunit of complex I \| chr5:2759848-2761726 REVERSE LENGTH=486