barSeed - Barley Seed Development Database

Probe CUST_13816_PI390587928

Source Contig U35_833

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13816_PI390587928	Hv_44K_v2	CGAATATGAAGGATTGTACCTTGCATGTTACATGAAGCTGTTTTTCTTCTTTAATGCAAG	503	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37893.1	1915	3e-22	1777 - 1832	100	56 / 56	plus	ABC02688
MLOC	MLOC_37893.2	1826	3e-22	1730 - 1785	100	56 / 56	plus	ABC02688
JLOC1	JLOC1_24585.1	2166	1e-22	1852 - 1907	100	56 / 56	plus
Harvest21	ABC02687	2087	5e-23	1799 - 1854	100	56 / 56	plus
Harvest35	U35_833	762	3e-25	504 - 563	100	60 / 60	plus
Harvest35	U35_832	1894	5e-23	1799 - 1854	100	56 / 56	plus

Contig Sequence (762 bp)

>U35_833 762 Hv_44K_v2
GAGCAGTTATGGTGATGGACAAATCCACAGATGTAGTTGATGCGATTGCTAGACTGTCAT
ACTTCTACAAGCATGAGAGCTGTGGGCAGTGCACGCCTTGCCGTGAGGGTACAGGATGGC
TCTGGATGATCATGGAGAGGCTCAAAGTGGGTAATGCGAAGCTGGAAGAGATTGATATGC
TTCAGGAGGTCACGAAGCAGATTGAAGGCCACACGATCTGTGCCCTCGGGGATGCTGCAG
CATGGCCTGTGCAGGGTCTTATCAGGCACTTCAGACCTGAGTTGGAGAGGAGGATCCGCG
ATCGTGCTGATAGGGAGCTGCTGATGGCAGCTTCTGCATAAGCACCACTTCTTGTTTGCT
GATTTTATTCACAGAAATAATGCAAACTGGTGAAGCTCATTTCTGCACATGCAGATGTAG
CTTACCTTATTGGTTGAACCTTTTATGTCGATGTTTATTTGATGCACTGATGAAGCCAGT
GTACTTTGATGGCGAAGTGGAAACGAATATGAAGGATTGTACCTTGCATGTTACATGAAG
CTGTTTTTCTTCTTTAATGCAAGTTACCTTTTAGTATTTATAGAATGAGGGAGTTAGCTA
GTGGTGTGACGAACTGCTGTCACGTTTTAAACTTTCAATTCTGGGTACTGCTAAGTTTCT
CTGCACTCTATGGTGCGCCGTGTGTGTTTGTCAATCAGCTGGTCGCTGCACCCTGATTTT
CTGCTGGACAGTGTTGGTTCCGCTCGCACGAGCTCCGGGAAA

Homology of Contig U35_833 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g45090.1	505	1e-65	protein\|NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor, putative, expressed
Brachypodium v1_2	Bradi1g53800.1	536	2e-67
Arabidopsis v10	AT5G08530.1	486	7e-66	\| Symbols: CI51 \| 51 kDa subunit of complex I \| chr5:2759848-2761726 REVERSE LENGTH=486