barSeed - Barley Seed Development Database

Probe CUST_13815_PI390587928

Source Contig U35_834

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13815_PI390587928	Hv_44K_v2	TACCTGAGTCCATTTGGAGAACTACGTTATTATAAAACGATAATGAATCGCATAGAGGAT	1946	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	14.717	9.203	1.591	0.755	0.227	0.311
Raw	459.453	474.655	67.934	50.984	4.025	7.534

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360336	1872	2e-24	1596 - 1655	100	60 / 60	plus	ABC40385
MLOC	MLOC_54057.1	4589	3e-21	4520 - 4579	97	58 / 60	plus	ABC40385
MLOC	MLOC_54057.2	4509	3e-21	4440 - 4499	97	58 / 60	plus	ABC40385
MLOC	MLOC_54057.9	2926	3e-21	2854 - 2913	97	58 / 60	plus	ABC40385
JLOC1	JLOC1_34779.3	1683	2e-21	1612 - 1671	97	58 / 60	plus
JLOC1	JLOC1_34779.2	1764	2e-21	1693 - 1752	97	58 / 60	plus
JLOC1	JLOC1_34779.1	1996	2e-21	1925 - 1984	97	58 / 60	plus
Harvest21	ABC02620	2053	1e-24	201 - 259	100	59 / 59	minus
Harvest35	U35_834	2037	8e-21	1791 - 1842	100	52 / 52	plus

Contig Sequence (2037 bp)

>U35_834 2037 Hv_44K_v2
CTTGGTTTCTGGCCTGGTTTGCCTCCGTTGCAGCTGCAAGGGGCGCCTCAAATCTCGTCC
ACCCAGAGCCCTATCGCCTAATGACGAGCCAGATGCCATGCCCGCCCCGCGCCACTCAGA
ATCTCCCCCCGCAATCTAAAATACTTATACCACCCACCCCCCGCTTCCATAAATATTATT
TCCAGCGCGATCTCACAGGTCGCCCCCCCTTCCCTCCCTCGCCTCGCCCGCGTCGCTGTC
TCTGGTTTCGGGGCGGCGGAGTCGCTGTAAGTAAGTAAGTAAGTACGTAGAGACGACGAT
GGCGCAGGCGGTGGTGCCGGCGATGCAGTGCCAGGTGGGGGTGAGGGGCAGGACGGCCGT
CCCGGCGAGGCAGCCCGCGGGCAGGGTGTGGGGCGTCAGGAGGGCCGCCCGCGCCACCTC
CGGGTTCAAGGTGCTGGCGCTCGGCCCGGAGACCACCGGGGTCATCCAGAGGATGCAGCA
GCTGCTCGACATGGACACCACGCCCTTCACCGACAAGATCATCGCCGAGTACATCTGGGT
TGGAGGATCTGGAATTGACCTCAGAAGCAAATCAAGGACGATTTCGAAGCCAGTGGAGGA
CCCGTCAGAGCTGCCGAAATGGAACTACGACGGATCGAGCACGGGGCAGGCTCCTGGGGA
AGACAGTGAAGTCATCCTATACCCACAGGCCATATTCAAGGACCCATTCCGAGGAGGCAA
CAACATACTGGTTATCTGTGACACCTACACACCACAGGGGGAACCCATCCCTACTAACAA
ACGCCACATGGCTGCACAAATCTTCAGTGACCCCAAGGTCACTTCACAAGTGCCATGGTT
CGGAATCGAACAGGAGTACACTCTGATGCAGAGGGATGTGAACTGGCCTCTTGGCTGGCC
TGTTGGAGGGTACCCTGGCCCCCAGGGTCCATACTACTGCGCCGTAGGATCAGACAAGTC
ATTTGGCCGTGACATATCAGATGCTCACTACAAGGCGTGCCTTTACGCTGGAATTGAAAT
CAGTGGAACAAACGGGGAGGTCATGCCTGGTCAGTGGGAGTACCAGGTTGGACCCAGCGT
TGGTATTGATGCAGGAGACCACATATGGGCTTCCAGATACATTCTCGAGAGAATCACGGA
GCAAGCTGGTGTGGTGCTCACCCTTGACCCAAAACCAATCCAGGGTGACTGGAACGGAGC
TGGCTGCCACACAAACTACAGCACATTGAGCATGCGCGAGGATGGAGGTTTCGACGTGAT
CAAGAAGGCAATCCTGAACCTTTCACTTCGCCATGACTTGCACATAGCCGCATATGGTGA
AGGAAACGAGCGGAGGTTGACAGGGCTACACGAGACAGCTAGCATATCAGACTTCTCATG
GGGTGTGGCGAACCGTGGCTGCTCTATTCGTGTGGGGCGAGACACCGAGGCGAAGGGCAA
AGGATACCTGGAGGACCGTCGCCCGGCCTCCAACATGGACCCGTACACCGTGACGGCGCT
GCTGGCCGAGACCACGATCCTGTGGGAGCCGACCCTCGAGGCGGAGGCCCTCGCTGCCAA
GAAGCTGGCGCTGAAGGTATGAAGGACCTGAAAAAAGGACGAATTCTTCTTCCGGGGAAA
AGAAAATAAATCGGCGAGCGGCGAGACCGTTGGCCGTCCATTCTTGTTGATCCTGTGGTT
CCGTCGGGGCACTGCCTGTACAAAATCCTCACAGTTTGTAGAACCACTCCCGCGTGTGTT
TTTCCGCTTGAACTGAGTCCATTTGATCTGTTGGGTCTGTACACTCACTGTACCTGAGTC
CATTTGGAGAACTACGTTATTATAAAACGATAATGAATCGCAGCAAAAAAAAAAAAAAAA
ATCCTCACAGTTTGTAGAACCACTCCCGCGTGTGTTTTTCCGCTTGAACTGAGTCCATTT
GATCTGTTGGATCTGTACACTCACTGTACCTGAGTCCATTTGGAGAACTACGTTATTATA
AAACGATAATGAATCGCATAGAGGATCTTTTTTTCTTCTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_834 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g56400.1	429	protein\|glutamine synthetase, catalytic domain containing protein, expressed
Brachypodium v1_2	Bradi5g24550.2	431
Arabidopsis v10	AT5G35630.1	430	\| Symbols: GS2, GLN2, ATGSL1 \| glutamine synthetase 2 \| chr5:13831220-13833239 FORWARD LENGTH=430