barSeed - Barley Seed Development Database

Probe CUST_13814_PI390587928

Source Contig U35_835

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13814_PI390587928	Hv_44K_v2	TGTAATAGTATCATTCTCCTGAGGTAAAACTAGTCGCTGTTGTCGCTAGGTTGTGTCCCC	1859	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.132	1.262	1.213	1.084	0.498	0.496
Raw	304.057	536.289	452.259	625.253	99.264	109.256

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57212.3	2917	3e-21	1860 - 1916	98	56 / 57	plus	ABC02621 ABC24807
MLOC	MLOC_57214.1	2383	3e-21	527 - 583	98	56 / 57	plus	ABC02621 ABC16273 ABC24807
JLOC1	JLOC1_37038.1	2286	2e-21	1710 - 1766	98	56 / 57	minus
JLOC1	JLOC1_37037.1	2879	2e-21	1997 - 2053	98	56 / 57	plus
Harvest35	U35_835	1919	3e-25	1860 - 1919	100	60 / 60	plus

Contig Sequence (1919 bp)

>U35_835 1919 Hv_44K_v2
GCGACACCTCGCCGTCCACCACCGCTTTCGCCCTCCTCCGCCGCCAGTCCAAGCCAACGC
CTCCTCCTCGACCACCTCATCCCCTCCATCTAGCCCTAGCGCCGCCAGCCAGCCAGCCAT
CCCGCCCGCCTGCCGCCTACCGTCAGCAGCTGCGAGGAGGAGACCATGAAGCTCGACGTG
AACGCCCTCCGCTACCTCTCCAAGGACGACTTCCGCGTCCTCACCGCCTGCGAGATGGGC
ATGCGCAACCACGAGATCGTGCCCGCGGAGCTCGTCGACCGCATCGCCGGATTGAAGCAT
GGAGGCACATATAAAGTGCTGCGGAATTTGTTGAAGAACAAACTGGTGCACCATGATTGT
AAAAAGTATGATGGGTTTCGGCTCACATATCTTGGGTATGACTTCCTCGCCATAAAAACT
TTGGTTAATCGTGGAGTCTTTGCTTCGGTTGGTCGCCAAATCGGTGTTGGAAAAGAGTCA
GATATATTTGAGGTTGCCACGGAGGATGGAACAGTGTTGGCCATGAAGCTTCATAGGTTG
GGTAGGACATCTTTTAGGGCTGTCAAATCAAAGCGTGACTATTTAGCCCACCGGAGGAGC
TTTAACTGGCTGTACTTATCACGGCTTGCGGCCCTCAAGGAATTTGCTTTTATGAAGGCT
TTAGGAGATCATGGATTCCCTGTTCCCACAGCGGTGGATTGCAATCGGCACTGTGTGATT
ATGTCACTTGTGCCGGGATATCCACTTGTTCAGATAAGAGAATTGCAAAATCCAGATGAT
GTTTTTGACAAAATTCTTGGTCTTGTAATTCGTTTGGCGGAGCATGGGCTGATACATTGT
GATTTTAACGAATTCAATATCATGATTGACGATGATGAGACTGTTACGATGATCGACTTC
CCACAGATGGTATCTGTTTCGCACCGGAATGCCCAGATGTATTTTGATCGAGATATTGGG
TGTATCTACAAGTTCTTTAACAAAAGGTTCAATCTTACAGAGAAAGGTGGACAAGATGGT
TCGGAAACTGATGATGATGACAGTGGCAGGCCGTCCTTTCTGTCCATTCAAAAGTCTTCT
GGTGCCTTGGACAAAGAACTAGCTGCCAGTGGCTTCACCAAAAAAGAGCAAGTTGAGATA
GAAAAGTTCATTGATGAGAATACTGAAGAACACGAATCCGGCTCCGGTGATGATGATTCA
ACGCCAGAACAGGAAAGTGATGATGGCGATGCTGTGTCTGCTGAAATCAGTTCCTTGAAA
ATAGTAGACCAGGACCCTGCAGGTGTGCCTGATCTTGTTGTGATGGATTCAGATAAACAT
GAAACTTTATCTAAAGAGCATGCAACAAGCACAAGCCCCAGTGGCGAGAACAAACCGACA
GATCCAACCGCCGATGGCGTCGAGGACCCTAAGGGATCCGAATCAGGAGGCGAAGACGAC
GATGACTCGTCGGAGGATACTGAGGATGAAGATGATGCATTGCTGACAAAGCAGCTGAAC
AAGCAAAGGAAAAGGGCGATGGCAGCTGCCCTCGGGCGGAGAAGGCCCCTCAACTCGAGG
AACGCTTACAAGGACAAGGGCAAGGGCACCATGAACTCCAAGATCCAGAGGCAAGCCTGC
CAATGGTGAATGGGTTAGTCCGCTTCGTTTCTCGCTGGAAACCGTAAGACGGTTGTCATA
GTCGGACAAGTGTACTTCCGTTGTCAGTCTTGGTTGTTGTGCTGGTTCTTCTCGAGGGTT
TTACCTGTTGAGCTGTAGTAAAAAACAAATGTAATACTGGTATCTTATACTGCTATTATC
AGCTGCCTATACATTTCTTGCTCTCTGGCAGTTTATAAAGCAAACCAGGTCTTAAAAAAT
GTAATAGTATCATTCTCCTGAGGTAAAACTAGTCGCTGTTGTCGCTAGGTTGTGTCCCC

Homology of Contig U35_835 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g66520.1	492	protein\|serine/threonine-protein kinase RIO-like, putative, expressed
Brachypodium v1_2	Bradi2g57330.1	488
Arabidopsis v10	AT3G51270.1	461	protein serine/threonine kinases;ATP binding;catalytics \| chr3:19033851-19036772 FORWARD LENGTH=461