barSeed - Barley Seed Development Database

Probe CUST_13806_PI390587928

Source Contig U35_843

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13806_PI390587928	Hv_44K_v2	TCATGTTAAGTGCCACATTATGGTGATGTTCCAAGTGCATCGAGTAAAACTTTGGAACCC	737	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.569	0.723	1.146	1.460	1.091	1.341
Raw	14408.300	28344.400	39895.667	75212.033	20843.867	28190.333

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359488	808	2e-24	708 - 767	100	60 / 60	plus	ABC02778 ABC29305
JLOC1	JLOC1_23899.1	896	8e-25	636 - 695	100	60 / 60	plus
Harvest21	ABC29305	292	3e-25	192 - 251	100	60 / 60	plus	ABC29305
Harvest21	ABC02778	902	3e-25	740 - 799	100	60 / 60	plus	ABC02778
Harvest35	U35_843	855	3e-25	738 - 797	100	60 / 60	plus

Contig Sequence (855 bp)

>U35_843 855 Hv_44K_v2
ACTAGTCCACTCGTTCTCCACGCATCTTCTTCTCTTATCCGCGCCACCTACGTTCCCGCT
CGAGATGCGGGCAGAGCTGCTGCTGCTCGGCGGCAAGGTGTCCACCGCAGCGGCGGCGTC
TGGCGCCGCCGCCGCGTCCTTGGCGGGAGCTGGACGCTGCGTGGCCGGCGGGCGGCGACT
CGCGCCCGTGCAGCCGGCGGCGCTGCAATGGCGGCATAGTGTCGCACTCGCACTCACACC
ACCACCGATCAGAGACCACCGCACCAACGCTGCGCCGCCGCCGAACTGTGGAGAGGAGAC
GCGGAGGACGGGAAGATGGGAATCCAGAAGGAGATCCTGAGAGCCGGCACCGGCCCCAAG
CCCGTCAAGGGCCAGAAGGTCACCGTCCACTGCACCGGCTACGGCAAGGACGGTGATCTG
TCCAAGAAGTTTTGGAGTACCAAGGATCCTGGGCAGCAGCCATTCGCTTTCAACATTGGC
CTGGGTTCAGTGATCAAAGGATGGGATGAGGGAGTTATGGACATGCAATTGGGTGAAGTC
GCCCGTCTTAAGTGCACCCCAGACTACGCTTATGGATCTGGTGGCTCTCCAGCCTGGGGA
ATTCAACCAAACTCCGAGCTGATATTCGAGATCGAAGTTCTTAGCGCCAAGTGATGCGCA
ATGCGATTCATGATGGATCTATAGAATACTGCTGCATCGCCATGCTTCTCGATTACCGAA
ATAATTGTAAGGCCACATCATGTTAAGTGCCACATTATGGTGATGTTCCAAGTGCATCGA
GTAAAACTTTGGAACCCTATTATATTCTAAAAAAAAAAAAAAAAAATTTCTGGGTGCCAA
AAAAAAAAAAAAAAA

Homology of Contig U35_843 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g52290.1	113	9e-64	protein\|peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed
Brachypodium v1_2	Bradi3g58250.1	201	2e-83
Arabidopsis v10	AT5G64350.1	112	2e-58	\| Symbols: FKBP12, ATFKBP12 \| FK506-binding protein 12 \| chr5:25734810-25735990 REVERSE LENGTH=112