barSeed - Barley Seed Development Database

Probe CUST_13804_PI390587928

Source Contig U35_845

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13804_PI390587928	Hv_44K_v2	GTAGTGCTGTTTTAGCAGCTTAAATGAACTGCTGTTTTACCATAGTACTACCTCTGTATT	687	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.096	2.326	1.277	0.793	0.323	0.332
Raw	1570.220	1905.123	892.172	872.766	123.823	139.673

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361327	811	3e-22	731 - 786	100	56 / 56	plus	ABC02733 ABC29309 ABC42972
Harvest21	ABC02732	789	3e-25	688 - 747	100	60 / 60	plus
Harvest35	U35_845	789	3e-25	688 - 747	100	60 / 60	plus

Contig Sequence (789 bp)

>U35_845 789 Hv_44K_v2
GCCGCCGCTCCCATTCGCTCGTCTCCTCCAACCCTAAGCGATGACGAAGGGTACCGGCAG
CTTCGGCAAGCGCCGGAACAAGACCCACACGCTCTGCATCCGCTGCGGCCGCCGCAGCTT
CCACCTCCAGAAGAGCACCTGCTCCTCGTGCGGCTACCCCGCCGCCCGCATCCGCAAGTA
CAATTGGAGTGTGAAGGCCATCAGGCGCAAGACCACCGGCACTGGAAGGATGAGGTACAT
GCGCCACGTGCCTCGCAGGTTCAAGAGCAACTTCAGAGAAGGTACCGAGGCTGCCCCCAG
AAACAGAGCAGCGGCCAACTAGGTCTTGATTTTGCCCCATCTGGAATCCCGTGAAGCTAG
AATTTAAAAACTTTTGCTTGGACTGTACCCCCTGCCTAAACTATTGTTGCTATAGAATTG
AGTATGGATCTGATATGTTCTGTTGCATGGGTTTGGAAATTGACCTCTGAATCTAAGACC
AAGTTTGTCTGAATGTTACAAGTTCTTGATCCGTTCTTCCTCCTTTTTTCTCTTGTATGT
TGGATGTAAGGGCATCTGCCCTCCAATCTAGTGAATTTTTTAGTGCTAAAAAAAAAAAAA
AAAATACTTTCTGAGCAAGTACAATAAGGTGACATAAGCAGACTATAGGGATTAGAACAT
TATATTAGTTGAAGGAGAGAGAAGTGAGTAGTGCTGTTTTAGCAGCTTAAATGAACTGCT
GTTTTACCATAGTACTACCTCTGTATTATAATATATGATGTTTTAGCTGCTTAAAAAAAA
AAAAAAAAA

Homology of Contig U35_845 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g03450.1	95	7e-55	protein\|ribosomal protein L37, putative, expressed
Brachypodium v1_2	Bradi3g55170.1	96	2e-55
Arabidopsis v10	None