barSeed - Barley Seed Development Database

Probe CUST_13803_PI390587928

Source Contig U35_846

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13803_PI390587928	Hv_44K_v2	TTGTTGCATGGGTTTGGAAATTGACCTCTGAATCTAAGACCAAGTTTGTCTGAATGTTAC	441	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361327	811	3e-22	442 - 500	98	58 / 59	plus	ABC02733 ABC29309 ABC42972
MLOC	AK250897.1	547	3e-22	451 - 509	98	58 / 59	plus	ABC02733 ABC29309 ABC42972
JLOC1	JLOC1_1158.2	655	1e-22	281 - 339	98	58 / 59	plus
JLOC1	JLOC1_1158.1	1381	1e-22	1007 - 1065	98	58 / 59	plus
Harvest21	ABC02735	531	3e-25	442 - 501	100	60 / 60	plus
Harvest21	ABC02732	789	1e-24	438 - 496	100	59 / 59	plus
Harvest35	U35_846	501	3e-25	442 - 501	100	60 / 60	plus
Harvest35	U35_845	789	1e-24	441 - 499	100	59 / 59	plus

Contig Sequence (501 bp)

>U35_846 501 Hv_44K_v2
AGGCCGCCGCTCCCATTCGCTTGTCTCCTCCAACCCTAAGCGATGACGAAGGGTACCGGC
AGCTTCGGCAAGCGCCGGAACAAGACCCACACGCTCTGCATCCGCTGTGGCCGCCGCAGC
TTCCACCTCCAGAAGAGCACCTGCTCCTCTTGCGGCTACCCCGCCGCCCGCATCCGCAAG
TACAATTGGAGTGTGAAGGCCATCAGGCGCAAGACCACGGGCACTGGAAGGATGAGGTAC
ATGCGCCACGTGCCTCGCAGGTTCAAGAGCAACTTCAGAGAAGGTACCGAGGCTGCCCCC
AGGAACAGAGCAGCGGCGAACTAGGTCTGGATTTTGCCCCCTCTGGAATCCCGTGAAGCT
AGAATTTAAAAACTTTTGCTTGGACTGTACCCCCTGCCTAAACTATTGTTGCTATAGAAT
TGAATATGGATCTGATATGTTTTGTTGCATGGGTTTGGAAATTGACCTCTGAATCTAAGA
CCAAGTTTGTCTGAATGTTAC

Homology of Contig U35_846 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g03450.1	95	3e-56	protein\|ribosomal protein L37, putative, expressed
Brachypodium v1_2	Bradi3g55170.1	96	9e-57
Arabidopsis v10	None