barSeed - Barley Seed Development Database

Probe CUST_137_PI390587928

Source Contig U35_45886

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_137_PI390587928	Hv_44K_v2	GGCAAACATTTGCAAGCAAACAACAGTTCAAGTGATCATTCTCAAGTGATTAGTTAAGAA	85	GeneList: lightcyan1 MasterList: Reassembly_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.240	0.200	1.077	3.327	1.777	1.908
Raw	3.280	3.064	32.220	130.466	29.883	33.661

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_442.1	1142	2e-24	867 - 926	100	60 / 60	plus	ABC45260
MLOC	MLOC_442.2	1276	2e-24	957 - 1016	100	60 / 60	plus	ABC45260
JLOC1	JLOC1_268.1	1038	8e-25	868 - 927	100	60 / 60	plus
Harvest21	ABC45260	533	3e-25	86 - 145	100	60 / 60	minus	ABC45260
Harvest35	U35_45886	533	3e-25	86 - 145	100	60 / 60	minus

Contig Sequence (533 bp)

>U35_45886 533 Hv_44K_v2
TTTTTTTTTTTTTTTTTGACACAAATAAATTGAATTCAACAACGCTAAAATATACATATG
ATGGTACATTCATGAACCAATCATATTCTTAACTAATCACTTGAGAATGATCACTTGAAC
TGTTGTTTGCTTGCAAATGTTTGCCCGAACTTCCATCCACCGGGCACAATATTGTTAAAC
TCAAGTGTCCGTCCATCTGTGTCAGTCAACCTGAATGAGAGTATTTTTCCGGTAAGATTT
GCTAAAGAGTGCCAGTTGGCACCCCAGTTACGGGACATTGTCATCCAATCGTTTGAATCA
AAGCTCTTGACATCCATCGATTTAATTGAGCCGGCGGCTGCGATGTTCATCACAGTAACT
AGGTTAAAGTAATCGTGACCATCGATCTTGAAACGCACCCCACCCTTCTTCACGCATGGG
ACCCTCTGGTACATGACGGGGATAATTCCGCCCTTGTAGACGCCGATCTTCTCCCAGGCC
GGTTGCGCCATGTCAAAGTGTGGCCTCGGTGGGTTGCACCAACCGCCATTGTC

Homology of Contig U35_45886 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g16800.1	279	4e-78	protein\|expansin precursor, putative, expressed
Brachypodium v1_2	Bradi3g09940.1	218	3e-85
Arabidopsis v10	AT1G20190.1	252	3e-60	\| Symbols: ATEXPA11, EXP11, ATEXP11, ATHEXP ALPHA 1.14, EXPA11 \| expansin 11 \| chr1:6998762-6999710 REVERSE LENGTH=252