- Probe CUST_13798_PI390587928
- Source Contig U35_851
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_13798_PI390587928 | Hv_44K_v2 | CCGTGGTATACAAAATAAAGGATGGAAAGTCTATGATTTCCTCTTCGAAAGTTAATTTGG | 519 | GeneList: lightgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.010 | 0.010 | 0.472 | 1.608 | 2.225 | 3.748 |
| Raw | 83.368 | 206.321 | 20650.733 | 97339.633 | 51204.200 | 95618.667 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_26577.1 | 792 | 2e-24 | 60 - 119 | 100 | 60 / 60 | minus | ABC02544 |
| JLOC1 | JLOC1_18050.1 | 677 | 8e-25 | 60 - 119 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC02545 | 588 | 3e-25 | 520 - 579 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_851 | 588 | 3e-25 | 520 - 579 | 100 | 60 / 60 | plus |
Contig Sequence (588 bp)
>U35_851 588 Hv_44K_v2 AGGCACAAAGCTCAACATGGCGTCTAGCCAACTCGTGCCCTGGGCCTTGTTGCTCGCTGT CCTCACCACCGTCGTGGCAACTGCGGAACGGGACTACGGCGAGTACTGCCGCGTGGGGAA GTCGATTCCCATCAACCCTCTCCCCGCTTGCCGAGAGTACATCACGCGCCGGTGCGCCGT CGGAGACCAGCAGGTGCCGGATGTCCTCAAGCAGCAGTGCTGCCGGGAGCTCAGCGACCT GCCGGAAAGTTGCCGGTGCGATGCCCTGAGCATCCTAGTGAACGGCGTGATCACGGAGGA CGGCTCCAGGGTCGGCCGGATGGAGGCGGTGCCGGGCTGTGACAGGGAGAGGATCCATTC CATGGGGTCGTATCTCACGGCGTATAGTGAGTGCAATCTGCACAATCCGGGTACCCCTGG AGGGGACTGCGTGCTGTTTGGTGGCGGCATCAGTTAGTTAGCTCTAGGTAGTACTCAAAT AAATGTTGCATGAGTCGATTGTGGTTGTGGTGCATGCATCCGTGGTATACAAAATAAAGG ATGGAAAGTCTATGATTTCCTCTTCGAAAGTTAATTTGGATATTAAAA
Homology of Contig U35_851 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |