barSeed - Barley Seed Development Database

Probe CUST_13793_PI390587928

Source Contig U35_857

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13793_PI390587928	Hv_44K_v2	GCAATCTTGCCCAGTGTAATAAGCCGGACTTTTCTACAATAAGATTCCCCCTTTTGGCGT	1826	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.798	5.127	0.995	0.785	0.286	0.694
Raw	1186.045	2083.818	337.411	438.807	52.436	142.537

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_21933.2	2279	2e-24	1953 - 2012	100	60 / 60	plus	ABC03096 ABC03097
JLOC1	JLOC1_15208.1	2268	8e-25	1962 - 2021	100	60 / 60	plus
Harvest21	ABC03097	1872	3e-25	1764 - 1823	100	60 / 60	plus	ABC03097
Harvest35	U35_857	1932	3e-25	1827 - 1886	100	60 / 60	plus

Contig Sequence (1932 bp)

>U35_857 1932 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGATGCCCAACGAGCCGCATTCCAATCGCAACACACACACA
CACACACAAAGCCTCCTCGCTCCAATCTTGTCTGCATCGAGAGCGCGAGATCCAAAGTTC
CAAACCCAACCAGCCTAGCTAGCAGCAGAGTTAGATGAACCAGAGCGGCATGGCGCGCAG
CGACGAGGGCTCCCTGGTGCCGCGGGAGGTGCCGGGCAGCTACGGCCTGCCGTTCGTCTC
GGCCATCCGCGACCGCCTCGACTTCTACTACTTCCAGGGCCAGGACAAGTACTTCGAGTC
CCGCGTCGAGAAGTACGGCTCCACCGTCGTCCGCATCAACGTGCCGCCGGGCCCCTTCAT
GGCGCGCGACCCCCGCGTGGTCGCCGTGCTCGACGCCAAGAGCTTCCCCGTGCTCTTCGA
CGTCACCAAGGTCGAGAAGAAGAACCTCTTCACCGGCACCTACATGCCCTCCACCTCCCT
CACCGGCGGCTTCCGCGTCTGCTCCTACCTCGACCCCTCCGAGCCCACCCACACCAAGGT
CAAGCAGCTGCTCTTCTCCCTCCTCGCCTCGCGCAAGGACGCCTTCATCCCGGCCTTCCG
CTCCCACTTCTCCTCGCTGCTCGCCACCGTCGAGTCGCAGCTCCTTCTCAGCGGCAAGTC
CAACTTCAACACGCTCAACGACGCCACCTCCTTCGAGTTCATCGGCGACGCCTACTTCGG
CGTGCTCCCCTCCGCCTCAGACCTCGGCACCACCGGCCCGGCCAAGGCCGCCAAGTGGCT
CATATTCCAGCTCCACCCGCTCGTCACGCTCGGCCTCCCCATGATCCTCGAGGAGCCGCT
CCTCCACACCGTGCACCTCCCGCCCTTCCTCGTCAGCGGCGACTACAAGGCGCTGTACAA
GTACTTCTTCGCCGCCGCGACCAAGGCGCTCGACACCGCCGAGGGCCTCGGGCTGAAGCG
GGACGAGGCGTGCCACAACCTGCTGTTCGCCACCGTCTTCAACAGCTACGGCGGCCTCAA
GGTGCTGCTCCCGGGGATCCTCGCGCGCATCGCCGACTCCGGAGAGAAGTTCCACAAGAA
GCTCGTCACGGAGATACGCGCCGCCGTGGCGGAGGCCGGCGGCAAGGTGACGATAGAGGC
GCTGGAGAAGATGGAGCTGACCAAGTCGGCGGTGTGGGAGGCGCTGCGTCTGGACCCGCC
CGTCAAGTTCCAGTACGGCCGCGCCAAGGCGGACATGAACATCGAGAGCCACGACGCGGT
GTTCGCCGTGAAGAAGGGGGAGATGCTGTTCGGGTACCAGCCGTGTGCCACAAAGGACCC
CCGGGTGTTCGGCCCCACGGCGAGGGAGTTCGTCGGCGACCGGTTCGTCGGGAAGGAGGG
GAGCAAGCTGCTGAAGTACGTGTACTGGTCGAACGGGCGGGAGACCGAGAGCCCCAGCGT
GCACAACAAGCAGTGCCCAGGCAAGAACCTGGTCGTGCTCGTCGGCCGGCTCCTGGTGGT
GGAGCTGTTCCTCCGGTACGACACCTTCACGGCCAAAGTCGGCCTCGACCTTCTCGGCAC
CAAGGTTGAGTTCACCGGCGTCACCAAGGCAACGTCCGGTGTGGCAGACGCTGTTTAAAT
CCTTCACCGGACGGCCATCGGTGACAAAGGGATCAACGCAGGGCAGCAACGATCCTTACA
CCGTCATCACGTACGTACGTACGTGCCTCGCTATATCTACCTTAGTAGTGTACGTACGAG
TCAGTCATGCATGTGCATGCATCTTGTTCGGTTGCTTCGCAGCATTGTGCCCTCGTGTAT
GTGTGCGTGTGTTGTGTTTACTTTTGGCAATCTTGCCCAGTGTAATAAGCCGGACTTTTC
TACAATAAGATTCCCCCTTTTGGCGTAAAAAAAAAAAAAAAAAAAAAGGTAAGTCAAAAA
AAAAAAAAAAAA

Homology of Contig U35_857 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g12500.1	479	0.0	protein\|cytochrome P450, putative, expressed
Brachypodium v1_2	Bradi1g69330.1	487	0.0
Arabidopsis v10	AT5G42650.1	518	8e-170	\| Symbols: AOS, CYP74A, DDE2 \| allene oxide synthase \| chr5:17097803-17099359 REVERSE LENGTH=518