barSeed - Barley Seed Development Database

Probe CUST_13790_PI390587928

Source Contig U35_16700

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13790_PI390587928	Hv_44K_v2	TGCCAATCACTATTTGATTTGGTCAGAGGCGATACGCACTGATATATTTCTGTTGCTTAA	1732	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_43641.1	1626	6e-24	1558 - 1616	100	59 / 59	plus	ABC02139
JLOC1	JLOC1_28215.1	1632	3e-24	1530 - 1588	100	59 / 59	plus
Harvest21	ABC02139	1781	3e-25	1707 - 1766	100	60 / 60	plus	ABC02139
Harvest35	U35_16700	1807	3e-25	1733 - 1792	100	60 / 60	plus

Contig Sequence (1807 bp)

>U35_16700 1807 Hv_44K_v2
AATCCTCCTCCGATAGGCCGCAGCGCAAAGCCCCCCCCATTTCCTTCTCTCCCCTCGCCG
CAATCCTCACCCCCGCCCCGGCCCCGGCCCCCGCCCCCGGCTGCGGCGCCGATGGGGTAC
GTGCTGTCAGCGGTGGCGAGGGTGCTGGAGCAGCCGACGGCGTGGGGCGCGGCCTGCGAG
ATGGCGCTGCTCGCCGGGCCGCTCTGGGCGGCCGCCCTCGTCGGCCTCCTGCTCGGCTGG
GCCTGGCGCCCGCGCTGGGCCGCCGGCATCGTCGCCCCCGCCGACCCGCCGCAGCTCGCC
TCGCTCGACTTCTGGCGGGCCCAGCTCCCCGCCCGCATCCGCGCCCCCCTCGACTACCTC
GCCGGCGCGCGGCAGCAGCAGGAGGACGACGACGAGGCCTCCCTGCACGGGTCGTCGGAG
ATGGGGAAGGAGGAGCTGGCGGTGGGGAAGGACGACCTGGTGAACCTCTGGAGGCTGGTG
GAGGGCAACGACGGCGGCCCGGCGTGGATCAAGATGATGGAGAAGGCGCTGCCCAACATG
ACCTACCAGGCCTGGAGGAGGGATCCCCAGAATGGGCCTCCGCAATACCAGAGCAGCACA
ATCTTTGAGAACGCAACCCCGGATGAAGTAAGGGACTTTTTTGGGGACGATGAGTTCCGG
ATGTCCAACAAGTGGGACGATATGCTCATCTCTCACCAGACGCTGGAGGAGTGCCAGACA
ACCGGGACGATGAAAGTGCATTGGGTTCGCAAGTTCCCCTTCTTCTGTAGTGACAGGGAG
TACATCATTGCTCGCCGGATATGGAAACTGGGAAGCGCGTACTATTGTGTTACAAAGGGT
GTGCCATGTTCATCCATCCCACGGCGCAGCAAACCTCGCAGAGTAGATTCGTATTACTCA
AGCTGGTGCATCCGTGCAGTGGAGTCAAGACGAGGGAACGGTGGATCGTCTGCCTGCGAG
ATCCTCTTGTTCCACCATGAGGATATGGGCATCCCAAATGAGATTGCGAAGATTGGCATT
CGGCAGGGCATGTGGGGATGCGTGAAGAGAATCGAACCCGGACTCCGGGCCTATCAGAAA
GCCAGGGCTGCTGGGGAGCCACCTTCGCCGAGCGCCTTGATGGCACGGATCAACACCAAG
GTCGGTGACAATTTTGTCCGAGGACTGGAGTCCAACAGTGACCAATCAGATATCATGGAA
GCCGAAGAGAAACCTGTGAAAAACCGTATGGCGAGGTTCCTTGTGCTCGGCGGGGCCGTG
GCCTTGGCGTGTACACTGGACCAAGGGCTCCTGACAAAGGCTCTCATCTTTGGCGTTGCG
CGGAAGTTTGTGGGGCAGAGGAACGCATTGTAGGATCTGACATCTTCCTCACAATCCTCT
GAGCCAATTTGCGTGGAGAGAGCGGAGATGATCTGGCTAACTGTAGCACATGCCGTTGAC
GGCAGATGAAGGACATTGGTGTACATATGCTGCCGGCAGTCGATGAGAGAGAGGGAGGCA
ACAGAGTAAAAAGATGTAATTTACATTTGGAAAAGGGATTCCAGCTATATATGAATTTTT
ATCTTTGTTTCATGTTATCTTCTATGTGAACTGGATATGAGGAAACGTAAATGAGGATGT
AATTACTCTTTTGTTCTTTATGAAGTATGTAGTGGCTCCTCCATTCTGATGGTGAAAGCG
AGTAAAATAGTTCTTGAATCAGTTTCACTTCACGTTGTAAAAAATGGATACTTGCCAATC
ACTATTTGATTTGGTCAGAGGCGATACGCACTGATATATTTCTGTTGCTTAAAAAAAAAA
AAAAAAA

Homology of Contig U35_16700 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g03230.1	421	0.0	protein\|membrane related protein CP5, putative, expressed
Brachypodium v1_2	Bradi3g02410.1	418	0.0
Arabidopsis v10	AT1G64720.1	385	3e-137	\| Symbols: CP5 \| Polyketide cyclase/dehydrase and lipid transport superfamily protein \| chr1:24046887-24048537 REVERSE LENGTH=385