barSeed - Barley Seed Development Database

Probe CUST_13783_PI390587928

Source Contig U35_860

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13783_PI390587928	Hv_44K_v2	GTGGTGTGAACCTTTTATCGTATGATGGATGGATAAATAATGGAGCTGAATAAAATTCAG	1021	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.374	0.475	0.820	1.472	1.171	1.473
Raw	7900.010	15879.780	24203.700	65206.900	18729.833	25738.933

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359422	1045	2e-24	971 - 1030	100	60 / 60	plus	ABC34930 ABC39144
JLOC1	JLOC1_10158.2	1194	8e-25	945 - 1004	100	60 / 60	plus
Harvest21	ABC34930	413	3e-25	337 - 396	100	60 / 60	plus	ABC34930
Harvest21	ABC02818	1028	3e-25	962 - 1021	100	60 / 60	plus
Harvest21	ABC02817	1111	3e-25	1022 - 1081	100	60 / 60	plus
Harvest21	ABC39144	461	6e-22	31 - 90	97	58 / 60	minus	ABC39144
Harvest35	U35_38941	413	3e-25	337 - 396	100	60 / 60	plus
Harvest35	U35_861	1085	3e-25	996 - 1055	100	60 / 60	plus
Harvest35	U35_860	1115	3e-25	1022 - 1081	100	60 / 60	plus

Contig Sequence (1115 bp)

>U35_860 1115 Hv_44K_v2
CAGGGTCACGCCCCCCGCGCGCCGCTGCCTCCGGCGATCCCAGCTCTTTCTTCCGCTCCC
TCTTCATAAATACCGCGCCCAGACCTCGCCGCAGATCGACCGCGCTCGCCCTCTCCGCCT
CCCTACTGCTGCTAGTAGCGCTAACCGGACTTCCCTCCGCCGCCAACGCCAACATGACCG
AGGTCTGCGTCAAGGCCGCCGTCGGCCACCCCGACACGCTCGGCGACTGCCCCTTCTCGC
AGAGGGTGCTGCTCACGCTGGAGGAGAAGAAGGTGCCCTACGAGATGAAGCTCATCGACG
TCAGCAACAAGCCCGACTGGTTCCTGAAGATCAATCCAGAGGGCAAGGTGCCTGTGTTTA
ACGGTGGTGATGGCAAATGGATTGCTGATTCTGATGTGATCACTCAAGTCATTGAGGAGA
AGTACCCGACTCCATCACTTGTGACCCCTCCTGAGTATGCATCAGTGGGATCAAAGATCT
TCTCCACCTTTGTCACCTTCTTGAAGAGCAAGGACGCCAGCGATGGCTCGGAGAAGGCAC
TTGTTGACGAGCTGCAGGCACTGGAAGAGCACCTAAAGGCCCATGGACCCTACATCAACG
GGGCGAACGTCTCCGCCGCGGATCTCAGCTTGGCTCCGAAGCTCTTCCACCTCCAGGTTG
CCCTGGAGCACTTCAAAGGCTGGAAGGTCCCTGAAACACTGACCAGCGTCCATGCTTACA
CCGAGGCTCTCTTCAGCCGTGAGTCGTTCGTCAAGACCAAGCCGACCAAGGAGAACCTGA
TCGCCGGGTGGGCGCCGAAGGTGAACCCGTAAGCTCCCCCGCCCGCCGCTCCGAGAACAC
CACCCGTTGTGCCAGTAGTGATGGCAGTAGTAAGGCCTCGTCTGTAGCTTGGGCGCATGG
TCGATCTGGGTTTGGAATAATGCGAGCGAGCCTTTGCTGTGTGCTCTGCCTGTCGCAAGC
GCGCACTTGCTGTGAGTTAGTGTTATGTGTGTGTTCTGGTGCAAGCAAGGGTGCATGTGT
TGTGGTGTGAACCTTTTATCGTATGATGGATGGATAAATAATGGAGCTGAATAAAATTCA
GAATTTGCCGTGTAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_860 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g02530.1	298	1e-131	protein\|glutathione S-transferase, N-terminal domain containing protein, expressed
Brachypodium v1_2	Bradi2g37480.1	214	3e-137
Arabidopsis v10	AT1G75270.1	213	4e-100	\| Symbols: DHAR2 \| dehydroascorbate reductase 2 \| chr1:28250255-28251237 REVERSE LENGTH=213