barSeed - Barley Seed Development Database

Probe CUST_13781_PI390587928

Source Contig U35_861

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13781_PI390587928	Hv_44K_v2	TGTGCATGTGTTGTGGTGTGAACCTTTTATCGTATGATGGATGGATAAATAATGGAGCTG	983	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.374	0.439	0.827	1.464	1.233	1.427
Raw	12514.933	23140.140	38783.467	101566.000	31455.233	39763.733

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359422	1045	2e-24	959 - 1018	100	60 / 60	plus	ABC34930 ABC39144
JLOC1	JLOC1_10158.2	1194	3e-24	934 - 992	100	59 / 59	plus
Harvest21	ABC02818	1028	3e-25	950 - 1009	100	60 / 60	plus
Harvest21	ABC34930	413	1e-24	326 - 384	100	59 / 59	plus	ABC34930
Harvest21	ABC02817	1111	1e-24	1011 - 1069	100	59 / 59	plus
Harvest35	U35_861	1085	3e-25	984 - 1043	100	60 / 60	plus
Harvest35	U35_38941	413	1e-24	326 - 384	100	59 / 59	plus
Harvest35	U35_860	1115	1e-24	1011 - 1069	100	59 / 59	plus

Contig Sequence (1085 bp)

>U35_861 1085 Hv_44K_v2
ACCGCGCCCAGACCTCGCCGCAGATCGACCGCGCTCGCCCTCTCCGCCTCCCTACTGCTG
CTAGTAGCGCTAACCGGACTTCCCCCCGCCGCCGCCAACGCCAACGCCAACATGACCGAG
GTCTGCGTCAAGGCCGCCGTCGGCCACCCCGACACGCTCGGCGACTGCCCCTTCTCGCAG
AGGGTGCTGCTCACGCTGGAGGAGAAGAAGGTGCCCTACGAGATGAAGCTCATCGACGTC
AGCAACAAGCCCGACTGGTTCCTGAAGATCAATCCAGAGGGCAAGGTGCCTGTGTTTAAC
GGTGGTGATGGCAAATGGATTGCTGATTCTGATGTGATTACTCAAGTCATTGAGGAGAAG
TACCCAACTCCATCACTTGTGACCCCTCCTGAGTATGCATCAGTGGGATCAAAGATCTTC
TCCACCTTTGTCACCTTCTTGAAGAGCAAGGACGCCAGCGATGGCTCGGAGAAGGCACTT
GTTGACGAGCTGCAGGCACTGGAAGAGCACCTAAAGGCCCATGGACCCTATATCAACGGG
GCGAATGTCTCCGCCGCGGATCTCAGCTTGGCTCCGAAGCTCTTCCACCTCCAGGTTGCC
CTGGAGCACTTCAAAGGCTGGAAGGTCCCTGAAACACTGACCAGCGTCCATGCCTACACC
GAGGCTCTCTTCAGCCGCGAGTCGTTCGTCAAGACCAAGCCGACCAAGGAGAACCTGATC
GCCGGGTGGGCGCCGAAGGTGAACCCGTAAGCTCCCCCGCCCGCCGCTCCGAGAACACCA
CCCGTTGTGCCAGTAGTGATGGCAGTAGTAAGGCCTCGTCTGTAGCTTGGGCGCATGGTC
GATCTGGGTTTGGAATAATGCGAGCGAGCCTCTGCTGTGTGCTCTGCCTGTCGCAAGCGC
GCACTTGCTGCGTGGACTGTCTGCCCCCTGCCTGGCTTGTGTGTGTGATTGTGGTGTGTG
TGTTCTGGTGGTGCAGTCAAGGGTGTGCATGTGTTGTGGTGTGAACCTTTTATCGTATGA
TGGATGGATAAATAATGGAGCTGAATAAAATTCAGAATTTGCCGTGTCAAAAAAAAAAAA
AAAAA

Homology of Contig U35_861 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g02530.1	298	9e-132	protein\|glutathione S-transferase, N-terminal domain containing protein, expressed
Brachypodium v1_2	Bradi2g37480.1	214	2e-137
Arabidopsis v10	AT1G75270.1	213	3e-100	\| Symbols: DHAR2 \| dehydroascorbate reductase 2 \| chr1:28250255-28251237 REVERSE LENGTH=213