barSeed - Barley Seed Development Database

Probe CUST_13769_PI390587928

Source Contig U35_16711

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13769_PI390587928	Hv_44K_v2	TTTTGTCTTGTAAACCTGTAACGAGACACGACACAAGACGCGGGTTAGGATGTATGTACC	2695	GeneList: thistle2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.568	1.332	2.229	1.883	0.735	0.941
Raw	324.123	1258.898	1779.813	2401.853	321.744	450.046

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36639.1	764	2e-24	528 - 587	100	60 / 60	plus	ABC07014
MLOC	AK366462	3347	7e-23	3182 - 3241	98	59 / 60	plus	ABC07014
JLOC1	JLOC1_23619.1	902	8e-25	597 - 656	100	60 / 60	plus
Harvest21	ABC07014	2940	3e-25	2696 - 2755	100	60 / 60	plus	ABC07014
Harvest35	U35_16711	2983	3e-25	2696 - 2755	100	60 / 60	plus

Contig Sequence (2983 bp)

>U35_16711 2983 Hv_44K_v2
GAAGGATCTTGAGGAGGGATCAATGTCGTCTATAGTAGAGTGTCTCTTGGCTCTAAGGGA
TAATGTATCAACAGGATTGGGTGAAAATATGTCTAACTATGCTGCTAAGACTCCATCAAG
GCCTGTGGCTCCAGTTTCCACACAAGGAAGGAGATCTCCTGGAGAGGACAGAAGAAGGGT
TCTTTGGGACGCCAAATCCCCACAAAGAAGTCCACTTCTTTCAGGACAGAAGACTAATGA
GGTTTTCCAATTTAAGCGTGGACAGTACACAGATATTCCTGCTGCTAAGATTTCAGAGAT
GATCCAGTCAAACAGTTTAGATAATGCTCCTACTCAATCACTACTTAGAGTTGTAAATGG
AATTCTGGATGAGAGTATTGAGAGAAAAAGAGGAGAAATACCACATCGAGTTGTTTATTT
ACTAAGGAACGTTGTTCAAGAGATTGAGCACCGCATTTCTATTCAAGCAGAACACATTAG
AAATCAAAATAATATCATCAAAACGCGCGAGGATAAGTACCGTTCAAAAATTAAAGCACT
CGAGACATTAGTAAATGGAACGAATGAAGAAAATGAGATGGCAATAAACCGTCTTGAGCT
AGTTAAGGTAGAGAAGTCAAAAATTGACGAGAGAAGAAAACTAGGCGAACAAGACATGGT
TCGCCTGATACGTGAAAAAGAAGATGCAGAGAATACAGTCAATAACCTTCGGCAGGAAAT
TCAAGTCATGAGTAAGATGTTCGAAGAATACAGAGAACAGATGGAAGCAAAAACAAACCA
AATGGAGGAACACTTGACTCTAAGAGCTAAGGAGGCGGAGTTTCTTCTTATGCAATCGAA
AAAGAGAATTGAAGAAGTTGAAACTGCTTCTGAACTGCAATCGCAACTTTGGAGTAAGAA
GGCAAATACTTTTCGAAGTTTTATGGATAATCAAAAACTGTCTATTAAGGATATAAGGAT
ATCATCTCAGTCAATTAAGCAGGAAATGTTTGCCCTTCAAATGAAATGGAGGGATGAAAT
ATCTAACATCGGACTTGACCTAAAAGGTTTGGTAGATGCTGCTGAAAATTACCATGGAGT
TCTTGCTGAAAATCAGAAATTATTTAATGAAGTGCAAGAACTAAAAGGTAATATAAGAGT
ATATTGTCGTGTCAGACCATTTCTTCCCGGTCAAGACGGAAAATCAACCGCAGTTGATTA
TATTGGTGAGAATGGTGAAATTCTCATTTCAAATCCCTCCAAGCAAGGAAAGGATGGTTA
TCGGATGTTCAAGTTTAACAAGGTCTTTAATACACATGTTTCTCAAGCTGAAGTTTTCTC
CGATATCCAGCCTTTGATTAGATCTGTTCTTGATGGATTCAATGTGTGCATTTTTGCATA
CGGCCAAACTGGATCTGGCAAGACATACACAATGAGCGGCCCCGGCACATCGAAAGAAGA
TTGGGGTGTTAACTATCGAGCTTTAAATGACTTGTTTGATATCTCGCTAAAAAGGAGAAA
CACTTTCTCATATGAGGTGGAAGTGCAAATGGTTGAGATATACAATGAACAAGTCCGGGA
TCTTCTATCAAATGATATTGCACAAAAGAGACTCGGGATTTGGAGTACTTCTCAACCTAA
TGGACTTGTCGTACCTGATGCAAGTTTAATCCCTGTCAAATCAACATCAGATGTATTAGA
CTTAATGGAAATTGGACAAGCAAATAGAGCAGTTGGATCAACAGCTCTGAATGAAAGGAG
TAGTAGGTCCCACAGCATTTTAACCGTGCATGTGAGAGGGCTGGACGTGAAGAATGGATC
TACTTCTCGAGGATGTCTACATCTGATTGACCTTGCTGGGAGTGAGAGAGTTGAGCGATC
TGAAGCAACCGGAGATAGATTAAAGGAAGCACAACATATTAATAAATCTCTTTCTGCTCT
TGGAGATGTCATCTTTGCTTTGGCCCAGAAGAATGCTCATGTGCCCTACAGAAACAGCAA
ATTGACTCAAGTTCTTCAGAGCTCTTTAGGTGGGCAAGCAAAGACGCTAATGTTTGTTCA
AGTAAACCCCGATGTGGAATCATGTTCAGAAACCATAAGTACTTTGAAATTTGCTGAAAG
AGTTTCTGGGGTCGAGTTAGGTGCTGCAAGGAGCAACAAAGAGGGCAAGGATATAAAAGA
TCTGCTAGAACAGGTTGCGTCTTTGAAAGACACAATATCACGTAAGGATATGGAAATTGA
ACAGCTCCAAGTCCTTAAATGCAATGTCAAATCTCCCAGCTCATTAACGGATAAAAGCGG
CAGTAGCTTGGTAAAACAGTCCTCTACGGCAAGCCAACAGAACCAACTAATATCAGGGTC
CATTGGATCAGGTGAACCCGAATACGAAGATAATGCATCCGACGATGGTTGCTCGGTAGG
CGAAACTGAGTATTCTATCGGCAGCGCTTCAGAACCAGCAGCAGATCGAACGCAGAAGGG
TCCATCAAGACTGACCAGGTTTTTCCTGACGAAGAACGGGCAGCCAGCTGCTTCCAGGCC
GAAACCGAAGGAACCTGTTCCAAAGACGACGCCCATAGGTCGCCGGAGCTCGATAGCCAG
CCAGGCCCCGACCGGAGCATCTTCGATCAAGCCCCCGAAGAAGCGGGTGGTCCCGTAAAG
GACGACGAGGGGCTGCTGCGTTGGTGTCTTGCATCTGTAACGAGGCTTGGATAGTTTTTG
TCTTGTAAACCTGTAACGAGACACGACACAAGACGCGGGTTAGGATGTATGTACCGTATG
TGTCGATTTCAACTGGGCAGGCAGCCATGTACCTGTAACACGACCCCGGATGATTTGGAT
CAATGATGGTGAGCAAGGTACGCTTGCTGGCCGCTGTGACCAGATATGATGAGTGTCTGG
GTTTATTGGCCTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGCTTGCCTGATGTG
GTGTTCCTAGCACCGGCCTTGTGGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_16711 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g54080.1	972	protein\|kinesin motor protein-related, putative, expressed
Brachypodium v1_2	Bradi2g49567.2	991
Arabidopsis v10	AT1G63640.1	1071	P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain \| chr1:23589234-23595139 REVERSE LENGTH=1071