barSeed - Barley Seed Development Database

Probe CUST_13767_PI390587928

Source Contig U35_16713

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13767_PI390587928	Hv_44K_v2	AAGTGTTTTCCTTGTCTGTGTGGAGGCATAGAGGAATAAATAAAGACATACTCCCTTCGT	1077	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.329	0.616	0.899	1.512	1.239	1.253
Raw	1471.540	4372.673	5471.700	13973.200	4170.097	4542.833

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_35548.1	1388	8e-25	1215 - 1274	100	60 / 60	plus
Harvest21	ABC01189	1109	3e-25	1026 - 1085	100	60 / 60	plus	ABC01189
Harvest35	U35_16713	1161	3e-25	1078 - 1137	100	60 / 60	plus

Contig Sequence (1161 bp)

>U35_16713 1161 Hv_44K_v2
GCTTACCACCACCACCAGCACAGCACAGCACAGCACCGCCCGTTCCCCTCTCCCATGGAC
GACCTCTCGCCGCGCGTGGAGATGGCCGAATCCGACGCGGCGGCCGGCAAGATGGCCAAC
GGCGAGGCCTCCGACGACACCGGCCGCGCCGTCGAGGTCTCCGGCGGCGAGGACACCCTC
CCCGCGGTGCTCCGCAGCTTCGTCGACGGCGTCCGGCCGCCGCCCGGCGACGGCGGAGAT
CCGCTCCTGCAGCGCCTCCGCGCGGCGTCCTGCGAGGCGGCCCCGCGGCTGCGGGACGCC
TCCAGGAACTCCGCCCGCGACCTGCTCGCCTGGACCAAGCAGGGCAGCGGCCTCCGCGCC
ATCCTCGTCATCTCGGTCGGAACAATCACGCTGATATCACTGACTGGCCTGCTGATTTTC
ATGTCCTTCCTTCTGGTTGCGACTGCTAATGCCATTGTCGTTTCAGTTCTTATGTCCTTG
GCAGCTGCTGGAGGGTTTCTGGCTTTGTTCTTTGCTTGCTTAGTTGCAGTGTATGTTGGA
GCAGTATCAATTGCTATATTCGTCATCTCCACCACCGTTATCTCTGCTATTGTTGCAGCC
ATGATTGCTACCGGTTGGATTGGATTCTTTTGGACGATTTGGTTTGCCGCAAGGAAGAGC
CTGGACCTCACCAAGCACTCGATCGGCATGACGACCTCTGCTGTGCAGTCGTATTCAGCC
TCTCGGCGCGTGGGGCAGAAGCCCACAGACTGATTGAGATAGCAGCAAGTGATTTAGCTA
CGGTGTGCTGTGTTCTCACGTGATGTTTCTGCCTCGCTGCCCTGCTGTTGTTGTGGTAAT
AGGCTGCGTGCCGTATGTGAATCACCGCTTGTCGAGTATGTTATTGCGAGTAGAGGTGAT
GAATCCCTGTATAGTGATCAGGATGTAGTGTAAGGTACCACCCGCCCCTAAACTTTCAGC
ACCCTGTGTTGTTTGCTCGTAGTAGCGAATAAGGCAATAATGCAGGCTGCGTCCGCACTA
ATAATGCAGGCTGCGTCGGCAAGTGCGGGCCAGGTTGTGGTGTTGTGCTGTAAATGGAAG
TGTTTTCCTTGTCTGTGTGGAGGCATAGAGGAATAAATAAAGACATACTCCCTTCGTTCC
AAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_16713 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g32980.1	225	2e-77	protein\|expressed protein
Brachypodium v1_2	Bradi3g36250.1	231	6e-82
Arabidopsis v10	None