barSeed - Barley Seed Development Database

Probe CUST_13765_PI390587928

Source Contig U35_16715

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13765_PI390587928	Hv_44K_v2	CCAGAGAGGGGTTATGTAGTAGATTTGTTTGTACTGTATGGTTACCAGATTTAATTAATG	1165	GeneList: saddlebrown MasterList: Aleurone_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.346	0.473	0.998	1.800	1.352	1.327
Raw	1282.943	2780.701	5261.067	14173.083	3925.093	4151.837

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373165	3105	2e-24	3024 - 3083	100	60 / 60	plus	ABC05771 ABC10960
MLOC	MLOC_10280.2	1275	2e-24	1193 - 1252	100	60 / 60	plus	ABC05771
MLOC	MLOC_10280.1	1490	2e-24	1425 - 1484	100	60 / 60	plus	ABC05771
JLOC1	JLOC1_6714.1	1622	8e-25	1187 - 1246	100	60 / 60	plus
Harvest21	ABC05771	1271	3e-25	1166 - 1225	100	60 / 60	plus	ABC05771
Harvest35	U35_16715	1271	3e-25	1166 - 1225	100	60 / 60	plus

Contig Sequence (1271 bp)

>U35_16715 1271 Hv_44K_v2
AGGACAAAGCCACCCACCCACCGATCGAGAGTCAGTCTCTCCCGGCCCTCCCTCCCCTCG
TGCGGTAGCCTCCAAATCATCCAACGTCCAATCCACTTCCAACAAGATACCGCCACCATC
CTCCGCCTGATCCGACCTCTTCCGTCAGCGACAGCGACCCCGCAACGCCCGGCTCCGTCG
GGATGGAGGAGGAGGGCGGCGCGAGGAAGGCGGTGCTCTTCAGGCTGTTCGGCGTCGAGG
TCCGCGGAGCGGAGGAGGAGGAGGAGGATGACGCGGAGCCCATGGAGCTCAAGAAGAGCA
CCAGCATGCCCAACCTCGCCTCCATCGGCCCGATTCTACCGCGCGGCGAGGCCAGCGCCA
GCCACGACAAGGGCTACGCCTCCGACGACGGCGAGCTGGCGTCCACGCCGCAGCTCAAGC
GCCGCCGCCGCAAGGCCCAGGAGCGCAAGAAAGGGATTCCGTGGACCGAGGAGGAGCACA
GGAAGTTCCTGGAGGGTCTGAAGCAGCTGGGCAAGGGGGACTGGAGAGGCATCTCCAAGA
ACTTCGTCACCACCAGGACGGCCACGCAGGTGGCCAGCCACGCCCAGAAGTACTTCCTCC
GGCAGACCAACCCCGGCAAGAAGAAGCGCCGGGCCAGCCTCTTCGACGTCGGCATCCCCG
CCGGCCACGGCTACGACGATCAGCTGCCGAGTCCTCACAGTGTTGGAACCAAGCTTGCTC
CTGCCGAGAAGATACTCCACACCGACCGCGGCGACGTGCCGCTACCAAGTTATTCTGAAG
TCATCAGGGGCAACAACAACAACAACACCCAGATGCAGGCTGATGAACTAACTGACCATG
CGAAGAAGAGATCAAAGTTCCCCACCGGAATGTCGCTGACCGCCATGGCTGCCTCCGGGC
TTGAGCTGGCAATGTCTTCCTCTCCCAGCAGCATCCTGGAGCTCAGCATCGGGCCTCCTC
GCCACTGCGCGGTCGATGCCATCAAGGTGCTGTGATTGATCCCCGGCTGCCGGGCTTGGC
CGAAAGGATTTACCTGGTGTCCCTGTTCTTGTTGCCGTGCTAACCTTGTTGTCCGTTCGA
TCGTCGTAGTAGCTTCTTCAGCTAGCGTATGGAGTAAAATACATAAGAATTGTCTGCTTT
GGTACTACAAGTTGGTGAAGGGAAACCAGAGAGGGGTTATGTAGTAGATTTGTTTGTACT
GTATGGTTACCAGATTTAATTAATGTTATATCGGTGCTTGCAAAAAAAATTAGTAAAAAA
AAAAAAAAAAA

Homology of Contig U35_16715 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g41260.1	266	2e-69	protein\|MYB family transcription factor, putative, expressed
Brachypodium v1_2	Bradi3g33440.3	274	1e-77
Arabidopsis v10	None