barSeed - Barley Seed Development Database

Probe CUST_13762_PI390587928

Source Contig U35_16717

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13762_PI390587928	Hv_44K_v2	TCTGCTTTGGATGTTTGTAACTGCCGCTGTCCAAAGCACATGAAGCTTCAGCATTGTGTT	2597	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.314	1.429	1.280	0.925	0.381	0.378
Raw	961.923	1615.868	1269.563	1419.067	211.380	225.651

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37049.1	5812	7e-23	5637 - 5696	98	59 / 60	plus	ABC06464
JLOC1	JLOC1_23936.2	5654	4e-23	5492 - 5551	98	59 / 60	plus
JLOC1	JLOC1_23936.1	5648	4e-23	5486 - 5545	98	59 / 60	plus
Harvest21	ABC06464	2717	3e-25	2598 - 2657	100	60 / 60	plus	ABC06464
Harvest35	U35_16717	2705	3e-25	2598 - 2657	100	60 / 60	plus

Contig Sequence (2705 bp)

>U35_16717 2705 Hv_44K_v2
CTTTCTTTGCACTGCAACAGCCAGGCCTTGATATATCAAGACAGGCTAAATCCTCGATTA
TTCCTGGTTTGAAAAAGAAGGCTCCAAATGCTGGTGCTGCTTCTAAAAGAGGTACTTATG
ACAGTGCTGGTGTGGGTGGAAAAGCTTCTGGTGTTGATCAAATGAATAATGCGGTGACAA
TCCTCTTGGAGCAAGTGGGGATGGCTGAAATGAATCGTGTATTCATAAGAAGTCAAAATC
TCAACAGTGAAGGTATAATTGATTTTGTAAAGGCCCTTTGTAAGGTTTCAATGGAGGAAC
TGCGGTCTGCTTCTGATCCACGTGTTTTTAGCCTGACTAAGATTGTTGAAATCACGCATT
ACAATATGAACCGCATCAGGCTTGTCTGGTCAAGCATATGGCACGTCTTGTCTGAATTTT
TTGTTACAATTGGCTGCTCAGAAAATCTTTCAATTGCAATATTTGCTATGGATTCATTAC
GGCAGCTTGCAATGAAGTTCCTGGAGCGAGAAGAACTGGCCAACTACAATTTCCAAAATG
AATTTATGAAGCCTTTTGTTGTTGTAATGAGGAAGAGTAGAGCTGTTGAGATAAGAGAAC
TAATCATCAGGTGTGTATCTCAAATGGTACTGGCCCGTGTTAATCATGTGAAGTCAGGGT
GGAAAAGCATGTTTATGGTTTTTGCAACAGCATCATATGATGATCATAAAAACATTGTAC
TCTTGGCCTTTGAAATTATCGAAAAGATTTTGCGAGATTATTTCCCCTACATTACCGAGA
CTGAGTCTTCAACTTTCACTGATTGTGTGAACTGTCTTATTGCGTTCACCAACAGTAGGT
TTAACAAGGATATAAGCCTTAATGCAATTGGTTTTCTTCGATTCTGTGCGGCAAAGCTGG
CAGAAGGTGACATCGGGTCCTCTTCAAGGCTGAAGGAACCCTCGTCTCATTTGACCAAAG
ATGGAAAGCAGGAAGGTGCAATTCAGGTTGATAAGGATGATACTATACACTTCTGGTTTC
CTTTATTAGCAGGATTGTCTGAACTTACCTTCGACCTTAGACCAGAAATTAGGAAAAGTT
CCTTGCAGGTGTTATTTGACACATTAAGAAACCATGGCCATCTTTTCTCTCTTCCTTTGT
GGGAGAAGGTGTTTGATTCAGTACTTTTCCCAATATTTGATTATGTACGGCATGCTATCG
ATCCATCTGGTGGTTCTTCACAAGGACAAAATGCGGAAAATGATCCTGCAGAGCTTGATC
AAGATGCTTGGATGTACGAAACGTGCACTTTGGCCCTTCAGCTAGTTGTAGACCTTTTCG
TCAAGTTCTATGACACTGTCCATCCACTTCTGAAGAAAGTTCTTTCACTCTTGACAAGTT
TCATTAAGCGTCCCCATCAGAGTCTTGCTGGTATAGGCATTGCTGCATTTGTTCGCCTGA
TGAGCAGTGCTGGCTCTGTCTTTGTGGATGAAAAATGGCTGGAAGTCGTGTTGTCTTTGA
AAGAAGTTACCACAGAGACACTTCCTGACTTCTCTTATATTGCGTCTGGGGCTTACCTTG
AAAATGTACCAATAGAAAATGGAGGCTCTTCAGATAAGAGAGAAGACGAATCTCAACCAT
CAGAGGATGGTACTGAAGAAACCTCTAGATCAAGGAACCTATATTTTGCCATTGCTGATG
CCAAGTGCCGAGCTGCTGTCCAACTCCTATTGATTCAGGCTGTGATGGAGATATATAACA
TGTACAGAGCTCAGTTGTCGGCACAGAACACAGTAATCCTCTTTGAGGCCTTGCATACTG
TTGCCACTCATGCTCACAAGATAAACAGTGACAACGACCTGCGGACCAAGTTGCAGGAGC
TGGGCTCTATGACCCAAATGCAGGACCCGCCATTACTACGCCTTGAGAACGAGTCGTATC
AGTTGTGCCTCACTATCCTCCAGAATATATTCTTGGACAGAGCTTCAGATGAAGGGAGCT
TAGAGGTCGAAACCCACCTTGTTGGACTTTGCAAGGAGGTTCTTGAGGTATACTTGAGCA
CAGCAAGGCCTGCTCACCTTTCTGGCGGTATACAGCCACTTGGCCATTGGCTTATTCCGG
TTGGTTCGTCAAAGCGGAGAGAGCTTGCAGCCAGGGCACCGCTTGTTGTCTCAACATTGC
AAGCTATCAGCGGTCTCGGCGACTCATCGTTCGAGAAGAACCTTGGCCAGTTCTTCCCCC
TACTAGCTGGTCTCATCAGTTGTGAGCATGGTTCAGGCGAAGTGCAGGTGGCCTTGAGTG
ATATGTTCAGCACTTGGGTTGGCCCAATCGTGCTTCAGTCCTGCTGATGTGAAGCACCCT
GTGATATAGTATACCCTCCACATGTAAGTTATTCTTTGTTCCAGACTTCCAGTGTCATAT
CTTTCTGTTGCTCCGTTTCCCCCCATTTCGTTGTGTTCATTATTTTAGTCCTTGTGGGAA
GTGGTGTCTTGAGCCGAACTGATCATGTAGATCCTTTTCCCTTTTATGCTCTTGGTTTTC
TACACTGGGAAGCGTGTATGTTACAAGATGATTAAATTATATATGCCTTAGTATAGTTCA
CCAAGTTATTGAGCAGTTCTGCTTTGGATGTTTGTAACTGCCGCTGTCCAAAGCACATGA
AGCTTCAGCATTGTGTTAAAAAAAAAAAAAAGAAATAAAAAAATNGAGGAGGGGCCCGGT
ACCCA

Homology of Contig U35_16717 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g14260.1	1790	protein\|guanine nucleotide exchange family protein, putative, expressed
Brachypodium v1_2	Bradi1g68180.1	1796
Arabidopsis v10	AT3G60860.1	1793	SEC7-like guanine nucleotide exchange family protein \| chr3:22484804-22491510 FORWARD LENGTH=1793