barSeed - Barley Seed Development Database

Probe CUST_13760_PI390587928

Source Contig U35_16718

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13760_PI390587928	Hv_44K_v2	GTGGGGTGTACTACATGCCGTCATACGTATATAATATAAACCCCCCTCGTATTGTATAAA	1227	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.521	2.266	1.103	0.762	0.427	0.405
Raw	51.835	72.433	31.645	34.167	5.936	6.345

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC06924	1299	3e-25	1226 - 1285	100	60 / 60	plus	ABC06924
Harvest35	U35_16718	1301	3e-25	1228 - 1287	100	60 / 60	plus

Contig Sequence (1301 bp)

>U35_16718 1301 Hv_44K_v2
CAAGAGGGAAGCGCGTCCTCGCCCCGGTGGAGTCAGGTCAGATCTGGCAGCCGCCCCCCG
CTGCGGCCAGTCTTAGCAGTGTCCGCCGGGTCGCCGCCGCCGGCAAGCAATGGCGGAGGA
GGGCCACCCGTCCCGCTACGTCAAGCTCACCAAGGACCAGGACGCTCCCAGCGAGGACAT
CCGCCCCGGCGAGCTCAACCAGCCCGTCCATGTCCCCCAGCTCGAGGGCAGGAGGTGCGG
CGAGTGCGGCCAGGTCCTCCCGGAGAGCTACGAGCCGCCCGCCGACGAGCCGTGGACCAC
CGGGATCTTCGGCTGCACCGACGACCCCGAGAGCTGTCGCACTGGATTGTTCTGTCCTTG
TGTACTGTTTGGGCGCAACGTTGAGGCCCTCAGAGAGGATATACCTTGGACAACGCCTTG
TGTTTGCCATGCCATCTTTGTGGAAGGAGGGATTACACTTGCAATCCTGACAGCAATATT
TCATGGTGTTGACCCAAGATCATCGTTTCTTATTGGAGAAGGCCTGGTGTTTAGTTGGTG
GTTATGTGGTACCTATACTGGCATTTTCCGTCAGGAACTCCAGAAGAGATATCATCTCAA
GAACTCCCCGTGCGACCCATGCATGGCTCACTGCTGCCTGCACTGGTGTGCCAACTGCCA
GGAGCACCGCGAGAGGAGGGGCCGCCTGGCCGACCACAGCGCTGTGCCCATGACTGTTGT
CAACCCGCCCCCGGTCCAGGAGATGAGCATGTCAGAGAACCGCGACGCCCCTGCCCCTGC
CAACCCGGAGAACGGATCATCCAACAAGGCTGAGCTCGAAGCGCGCAAGAGCGACCACGA
CGATGTGGAGGTCATCCCTCTATAGACCAACCAAAGAAAGAAAAATAAAGCCAACGGAGT
TTCGATATACAGAAGAATGTTAGGATAGCATGATGGCGGGAGCGAGCGAGGCATGAGAAA
GGAAAGATTGTCCCTCCGTGAACTTGTTAGTGGAATCGCTGATCAATGTTCTCGTCTCCA
ATCTTGAACCATTACTGTAACTCAATGAGGTCGTTAGTTCGTTATCTTCTGATGAAGGTG
GTTTTTATGTGTACAATCGAAGAAGATAACCAGAGCTAATTATTTGTCTGCTGAATCGAC
TACTTCAAATTCATTCGCAAATACATGATGAGTTTCCATGTGGTTTTTGGGAGGTTTTTT
TTGTTAGAAAAATGTGATGTTCTCTGAGTGGGGTGTACTACATGCCGTCATACGTATATA
ATATAAACCCCCCTCGTATTGTATAAAAAAAAAAAAAAAAA

Homology of Contig U35_16718 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g01210.1	258	1e-161	protein\|uncharacterized Cys-rich domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g78450.1	246	9e-177
Arabidopsis v10	AT2G45010.1	244	1e-119	PLAC8 family protein \| chr2:18568045-18569615 FORWARD LENGTH=244