- Probe CUST_1373_PI390587928
- Source Contig U35_30058
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1373_PI390587928 | Hv_44K_v2 | TCCGGTTTGTGAGAGGACAGCGGATGGTAATGGATTGAAATTTGGTGGATTTTCAAAAAA | 269 | GeneList: mediumpurple3 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 5.970 | 6.210 | 1.202 | 0.764 | 0.388 | 0.450 |
| Raw | 189.959 | 301.113 | 51.590 | 51.994 | 9.266 | 12.051 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC29746 | 336 | 3e-25 | 270 - 329 | 100 | 60 / 60 | plus | ABC29746 |
| Harvest35 | U35_30058 | 336 | 3e-25 | 270 - 329 | 100 | 60 / 60 | plus |
Contig Sequence (336 bp)
>U35_30058 336 Hv_44K_v2 GCGAAACCGATGCTCTTATTTTTTGGCGTCTTCGTAGACGGGATGGTTAGAGAGACGCTC TACAACCAGCCAGTAGCAGCAGCAGTAGTGCCGGCATTTTGATGCTATTTAAGCTTGAAA CAATGGCTCAATGTGTCATCTTGGTGATGGTCTTAAGACTCTAGAATTCAGAGCAGAGTA GTTTTAAGTAGATTATTATGTATCACTGGCAGCTTTTGGTAAGCTTGTGCTGCGCCCACG CAACAGCATTTTTCACTCTCACTGCATCATCCGGTTTGTGAGAGGACAGCGGATGGTAAT GGATTGAAATTTGGTGGATTTTCAAAAAAAAAAAAA
Homology of Contig U35_30058 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |