barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_13733_PI390587928Hv_44K_v2ACATGTTCTTGTGTGTGGCACAGGTGTGTTGTTCTGTTGCGTTCAGTTGTGAGATGAGAA923GeneList: darkslateblue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.8682.3941.5210.5180.1590.194
Raw 98.747193.723108.71460.6295.1268.512



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest35U35_55249893e-25924 - 98310060 / 60plus



Contig Sequence (989 bp)

>U35_5524 989 Hv_44K_v2
GGCACGTAGGGCCGGCGGNACGGCCCCGCGCCCGCCGCCTCCCCGGGGACGCTCGCCTCC
GGCCACCCACANAGTAGCTTTGGAGTGGTGGGATGGCCACCAATAAGAACATTCAGGATG
AACAGCCTGTTCGGCCAGGCCAAAGACAATGCCTCGGAGGCCGAAACCAAGAAGGCCGCC
GCCGATGACTCTGGCTCGCAGAAAGACAAGGAGGAGGGCGAGAAGAAGGGCCGGGTGCCA
GGGTGGGTGAAGGTGAACATGGATGGGGAGGTCATTGGGAGGAAGGTGGACCTCAACGCC
CACCGCTCGTACAAGACCCTTGCCTTGGCCCTTGAGATCATGTTCACCAAGCCGTCCGCC
GGCCTTTGCGCTTCTAATGGTACGAAGTCCTTGAAGCTGTTAGACAACTCTTCTGAATAC
CAGATGACATATGAAGACAGGGATGGTGACTGGATGCTTGTTGGAGACGTCCCTTGGGAA
ATGTTTGTTGGCTCCGTGAAGAGGCTAAGGATCATGAGGACATCGGACGCCAGCGGTCTC
GGGCCACGGTTTCAAGCCAGTCACAGAACCGCAGCCTTGACACGAGGGAGGACATGAGAC
GAGGGTGATGAAGAGCCGCCGACCGACCGAAAGAGCTGTGTACCGTCGCCGGCAAAAGCT
TGAAATACGTCGTGCATCCGACACCGACGTTCCATGTCCGAGCAGCCAGCCACTGTCTCT
GGCGCAGCCGTTGTGATTACTTGTGTGTCTAGTTGAGATGGCAGGAGCTAGGATGCCCTC
TTCCTGCTATCTATCTAGTGGTGGTGACTCGGTTCAGAGCTTGTAGTATCTATTCTTTTC
CCAGGCCCCCTCTCCAGTTCTGTCCACACTTGGTGAAGTGCTGATCACTGCTAGCATATG
TGCTCTTTTTTTGGGGGTCATATACATGTTCTTGTGTGTGGCACAGGTGTGTTGTTCTGT
TGCGTTCAGTTGTGAGATGAGAAGCCCAC



Homology of Contig U35_5524 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os02g57250.12822e-109protein|OsIAA10 - Auxin-responsive Aux/IAA gene family member, expressed
Brachypodium v1_2Bradi3g55410.12822e-115
Arabidopsis v10None