barSeed - Barley Seed Development Database

Probe CUST_13730_PI390587928

Source Contig U35_5527

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13730_PI390587928	Hv_44K_v2	TAACCCGAGGATTCTCATCTGTAGCCGTTGTAGACCTGATAATGCATTTGCTGATGAAGC	1202	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.334	1.194	1.090	0.914	0.374	0.396
Raw	3395.007	4853.873	3843.747	5123.987	728.549	842.042

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58975.1	6309	2e-24	3140 - 3199	100	60 / 60	minus	ABC05392 ABC13339 ABC38204
MLOC	MLOC_58975.3	3278	2e-24	123 - 182	100	60 / 60	minus	ABC13339
MLOC	MLOC_58975.2	3344	2e-24	123 - 182	100	60 / 60	minus	ABC13339
JLOC1	JLOC1_38346.1	3305	8e-25	3095 - 3154	100	60 / 60	plus
Harvest21	ABC13339	1261	3e-25	1171 - 1230	100	60 / 60	plus	ABC13339
Harvest35	U35_5527	1390	3e-25	1203 - 1262	100	60 / 60	plus

Contig Sequence (1390 bp)

>U35_5527 1390 Hv_44K_v2
AAAGTGGCCGAAGAAAGCGCCCGAAGGGCAATTCAGAGATCCCCTGCTGCGTGGGGAATG
CTACGAGAGAAGATATGGAAATTACATTTTTGGGTACGGGTTCATCCCAGCCTTCAAAGT
ATCGAAATGTTAGTTCCATATATATTAATCTGTTTGCACAGGGAGGTATGCTTCTTGATT
GTGGTGAAGGAACGTTAGGACAGCTGAAAAGGAGGTTTGGTGTAAGTGGTGCTGATGAAG
CTGTAAAAAACTTGAGGTGCATCTGGATTTCCCATATTCATGCTGATCACCACACGGGTC
TTGCTAGAGTTCTTGCCTTGAGGTCAAAATTGCTAAACGGTGTTCCTCACAAACCCTTGC
TCGTGATTGGACCAAAACAACTCCTGAGATTTCTAAATGCATATTCTACACTTGAAGATC
TTGATATGCAGTTCCTAGACTGCAGACAAACTTTGAAGCCTAGTGTCGAGGAACTTCTTG
GGGACAATGCCACCGAATCTGCAACAACTCAACTTGAAAACACCATGTTTGCCCCTGGAA
GCAGAATGGAGAACTACAACAAGAAGCCTTCGAGTCCGAAAGATACTACAGCTCTCGCTA
ATTTGAAAGAAATTCTGCATGAGTCGGGTTTGGAGATTCTGTACAGTGTCCCCGTTGTAC
ATTGTGCACAGGCGTTTGGAGTTGTTTTGAGAGCCAAGGAGAAGGTGAATAGTGTTGGGA
AGGCAATTCCAGGATGGAAGGTTGTATATTCAGGTGACACTCGGCCCTGCCCAGCTCTTG
TAGACGCGTCCAGAGATGCCACAGTGCTGATACATGAGGCGACGTTTGAGGACAGCATGA
AGGACGAAGCGATCGCAAAGAACCACAGCACAACGAAGGAAGCCATAGCGGTAGGCACAT
CGGCTGGAGCGTACCGCATCATCCTGACCCACTTTAGCCAGAGATATCCTAAAATCCCGG
TCTTTGACGAGGACGACATGCACAAGACCTGCATCGCTTTCGACCTGATGAGTGTAAACC
TTGCCGATTTGCCCGTGCTGCCGAAGGTTCTGCCTCACCTGAAGCTCCTCTTCAAGGACG
AGATGGTCGTTGAAGAGTCGGATGAGGTCCTGGAGGCCGTGGTGTAGCGAGGGAGATAGT
AGCATATAGACACAACAATGCACATTGTATTTCTTTTATCGCTCGGCAATTGGCATGATT
TTTAACCCGAGGATTCTCATCTGTAGCCGTTGTAGACCTGATAATGCATTTGCTGATGAA
GCCACCGACCGTGAGGTCAGATAGCGGCCGCTCCTGATGACAAACCTCCAACTCCTCCCC
CATTGCCATCATCTCCACCACCTCTACCACGTCCTAATTGTCCTGTCATTCAAGGTTCAC
AGGTTCAAGG

Homology of Contig U35_5527 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g13150.1	821	0.0	protein\|metallo-beta-lactamase family protein, putative, expressed
Brachypodium v1_2	Bradi2g09007.1	932	0.0
Arabidopsis v10	AT3G16260.1	942	1e-147	\| Symbols: TRZ4 \| tRNAse Z4 \| chr3:5509397-5513118 FORWARD LENGTH=942