barSeed - Barley Seed Development Database

Probe CUST_13720_PI390587928

Source Contig U35_5539

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13720_PI390587928	Hv_44K_v2	GCTACACTATCAAGTTTGTTGATAAGAAAAATCGAATTTGTAATGGGAAACGGCAACGAA	1411	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365161	3542	2e-24	1060 - 1119	100	60 / 60	plus	ABC11892 ABC15187 ABC19934
MLOC	MLOC_55396.3	1307	2e-24	1241 - 1300	100	60 / 60	plus	ABC11892
MLOC	MLOC_55396.1	3880	2e-24	725 - 784	100	60 / 60	minus	ABC10086 ABC11892
Harvest21	ABC11892	1494	3e-25	1412 - 1471	100	60 / 60	plus	ABC11892
Harvest35	U35_5539	1494	3e-25	1412 - 1471	100	60 / 60	plus

Contig Sequence (1494 bp)

>U35_5539 1494 Hv_44K_v2
AGAGTGGCCGGCTAGCTACCGCGTTATCTTCTTCCTTTGCCCGCTCCTCCTCCGCGTTCC
TCGGCTCCGAATCCGGCCGGCGCCCGCGCCCGGCGGCAGCCATGGCGTGCTCCGCCCATC
TCCTCTCGCAGAGCCTGTGCCAACCCCACCGCTCCTGCCCGGCCCCGTCCAAGCGGCACC
TCCGGTTCCAGGCCAGACCCGCGGCCGCGGCTTCCGCCGGCGTCAGCTCCAGCGCCAGGA
GCCGACGGTCTTCTAGTATAAGAGTCGCCGCGTCGGCCGAGCAAGGGAGGAAGAAAATCG
AGCTTACGTATGACGCACAAGCCAAGTTTAACCAGCTAGCCGACCAAATTGACAAGGATG
TGGGGATTACACGGCTCAACCTGTTCTCACCTTGCAAAATTAATGTCTTCTTGAGGATAA
CCGGGAAGAGACCAGATGGGTTCCATGACCTGGCTTCTCTGTTTCACGTGGTTAGTTTGG
GTGATACTATCAAATTCTCACTGTCGCCAAGTAAGAGCAAAGATCGGCTATCAACCAATG
TTGCAGGTGTCCCAGTTGATGAGAGTAACTTGATCATCAGGGCACTTGATCTGTACCGCA
AGAAAACTGGCACCGATAAGCACTTTTGGATACATCTTGATAAGAAGGTCCCAACTGGTG
CTGGTCTTGGTGGAGGAAGCAGTAATGCTGCAACTGCACTATGGGCTGCTAACCAGTTTA
GTGGTAGCATTGCTTCAGAAAAAGATCTTCAAGAATGGTCTGGTGAGATTGGATCAGATA
TCCCCTTCTTCTTTTCACGAGGAGCAGCATATTGTACCGGTAGAGGAGAGATTGTCCAAG
ATATTCCAAACCTGTTGCCAGAGAATCTGCCAATGGTTCTAATAAAGCCACCTGAAGCAT
GCTCAACCGCTGAAGTTTACAAGCGACTCCGGTTAGATCAGACTAGTCAAGCTGATCCTT
TGGCTTTGCTCAAGGAAATTACGCAAAATGGGATATCACAAGATGTCTGTGTAAATGATC
TAGAGCCTCCAGCTTTTGAGGTGTTGCAGTCACTAAAGAAGTTGAAGAAACGATTTATTG
CATCCAATAGGGGAGATTACAGTGCTGTTTTTATGTCAGGAAGTGGAAGCACGATTGTCG
GAATTGGTTCCCCAGACCCACCTGCGTTTGTGTATGACGATGAAGACTACAAGGACGTTT
TTGTGTCAGAGGCTCGCTTTCTCACTCGCGAGGAGAATGAATGGTACAGGGAACCAATGT
CATCGAGTGCCACGTTTAGCAAGGAAGACTCACTGTCAGAGGCAGCACCGGTCGTTGACT
GACTGAGTGAGGCTCTGTATTTGGTCTCAGTTTTGTGGTTGTGGTACACAGGTGTGAATT
TGTTCCAATCCATGCTGACATGAGAAGAACAGCTACACTATCAAGTTTGTTGATAAGAAA
AATCGAATTTGTAATGGGAAACGGCAACGAAATTAAGCAAAAAAAAAAAAAAAA

Homology of Contig U35_5539 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g58790.1	402	0.0	protein\|GHMP kinases ATP-binding protein, putative, expressed
Brachypodium v1_2	Bradi2g52610.1	407	0.0
Arabidopsis v10	AT2G26930.1	383	1e-159	\| Symbols: ATCDPMEK, PDE277, ISPE, CDPMEK \| 4-(cytidine 5-phospho)-2-C-methyl-D-erithritol kinase \| chr2:11491829-11494229 REVERSE LENGTH=383