barSeed - Barley Seed Development Database

Probe CUST_13704_PI390587928

Source Contig U35_5555

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13704_PI390587928	Hv_44K_v2	GCAGGTGGCTGAGCTTGCCGCGGCGCTGAAGGGCAGCAAGCAGCGGTTCATCTGGGTGTT	61	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356492	1964	2e-24	588 - 647	100	60 / 60	minus	ABC45672
MLOC	MLOC_53307.1	1385	2e-24	650 - 709	100	60 / 60	plus	ABC45672
JLOC1	JLOC1_34238.1	1235	8e-25	525 - 584	100	60 / 60	plus
Harvest21	ABC45670	355	3e-25	51 - 110	100	60 / 60	plus
Harvest21	ABC45671	415	1e-23	62 - 121	98	59 / 60	plus
Harvest35	U35_5555	397	3e-25	62 - 121	100	60 / 60	plus

Contig Sequence (397 bp)

>U35_5555 397 Hv_44K_v2
AGCAGCCGGCGGCGTCGGTGCTCTACGTGTCGTTCGGCTCGACGTCCTCGCTCCGAGGGG
GGCAGGTGGCTGAGCTTGCCGCGGCGCTGAAGGGCAGCAAGCAGCGGTTCATCTGGGTGT
TGCGGGACGCCGACCGCGGCAGCGTATCCACGGACGACGCCGATGGCCGCCGGCACGCGA
GGCTGGCGTCCGAGTTCGCCGAGCAAACCCGGGGCACGGGGCTGGTGATCACCGGGTGGG
CACCGCAGCTGGAGATCCTGGCGCACCCGGCCACGGCGGCTTTCATGAGCCACTGCGGCT
GGAACTCGACCGTGGAGAGCATGAGCCACGGGAAGCCGATCCTCGCGTGGCCCATGCACT
CCGACCAGCCGTGGGACGCCCAGTTCGTCGAGAAATA

Homology of Contig U35_5555 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g47770.1	465	7e-68	protein\|cis-zeatin O-glucosyltransferase, putative, expressed
Brachypodium v1_2	Bradi2g06130.1	473	3e-72
Arabidopsis v10	None