barSeed - Barley Seed Development Database

Probe CUST_13697_PI390587928

Source Contig U35_5562

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13697_PI390587928	Hv_44K_v2	AGTTTCAGTTTGCTCAGTTATTGTTACAGGAGCCATGACCAGGCTGTTTGAGATCCAAAA	964	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52678.2	1184	7e-23	1055 - 1111	100	57 / 57	minus	None
MLOC	MLOC_52678.1	2008	7e-23	554 - 610	100	57 / 57	plus	ABC12607
MLOC	AK353943	1600	3e-22	1545 - 1600	100	56 / 56	plus	ABC12607
JLOC1	JLOC1_33773.2	2026	4e-23	1276 - 1332	100	57 / 57	minus
JLOC1	JLOC1_33773.1	1785	4e-23	1035 - 1091	100	57 / 57	minus
Harvest21	ABC12607	1024	3e-25	965 - 1024	100	60 / 60	plus	ABC12607
Harvest35	U35_5562	1024	3e-25	965 - 1024	100	60 / 60	plus

Contig Sequence (1024 bp)

>U35_5562 1024 Hv_44K_v2
CGCGAAGAGCCCCACGCCCACCTCCAAGATCGAGTCTTACCTGCAATTCGCGGATAAAGG
TTTTGAAGATGCCAACATTCCATTTGGCCCTGTTGAAGCGAGTCATCCAATTGCCTTAAC
GACAGCTGATGCAGTTGCAACCAATGGTGTGAATCCATGGAACTGGAGAGACACCTCAAC
TAATGGTGGAGATAATCATGGTACTTATGGTGGGAGGGTCATCCTAGTCAAGTGGGGTGA
CTATACTAAAAGAATAGGGATTGATGGTACTGCTGAGGCAATTAAAGAGGCCATCAAATC
TGCCTTTGGATTAAGAACAAGACGCGCTTTTTGGCTTGAAGATGAGGATGAGGTTGTTCG
TTCCTTGGACAGGGACATGCCAGTCGGAATATACGCTCTTCATCTTGATAATGGGATAAC
AATCAAACTCTGCACATTCGAAGATGCAGACCGCATGACAGTCCGGACAGAAGATAAAAC
ATTCTACACCGAAGACGACTTCAGAGATTTTCTGTCACGACGTGGTTGGACACTCCTCAG
GGAGTATAGTGGCTACAGAGTCGCTGATACTCTGGACGATCTTCGTCCTGGCGCGATTTA
CCAGGGGATGCGCTCACTTGTCGATTGATCCTGCATCATTTGCCCGACAATGGGCATCTA
TATCTGGGGTATGTTGGTTTTGAGCCCAAGTTCGTGCTTGCCCATTGTTGGCAAGAAAAC
GAACTAGAATGGCCAAGTTTTTGGGCCATGATAAAAAATAAATGATCATGGAAACATACC
CCTAATTTATCTACCGTATAAGCGGTCCGTTCATACAGTTGAACATAGTTTCAAAGCCAG
TATTTAGGCGTGTCCCTGACTGTAAATGTATTCCTGTATCCGGGAGCCATATTGTAGGAA
TGGCTATCTAGGTAAATATTATTATATATTATAGCCATGGAAACAAACTCTGTAAGGTCG
CCTGAGTTTCAGTTTGCTCAGTTATTGTTACAGGAGCCATGACCAGGCTGTTTGAGATCC
AAAA

Homology of Contig U35_5562 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g40930.1	386	2e-118	protein\|MYB family transcription factor, putative, expressed
Brachypodium v1_2	Bradi5g13900.1	380	7e-130
Arabidopsis v10	AT1G13450.1	406	2e-83	\| Symbols: GT-1 \| Homeodomain-like superfamily protein \| chr1:4612999-4615115 REVERSE LENGTH=406