barSeed - Barley Seed Development Database

Probe CUST_13695_PI390587928

Source Contig U35_5564

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13695_PI390587928	Hv_44K_v2	CAATTGGGCCATCATATATAGAGTTACTTGATGTTCAACACTTTCACAATAAAGAAGCTC	640	GeneList: sienna3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.349	1.582	0.947	1.014	0.351	0.193
Raw	240.029	168.467	92.397	138.076	19.979	11.474

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15027.1	2253	2e-24	15 - 74	100	60 / 60	minus	None
MLOC	MLOC_15027.2	1829	2e-24	12 - 71	100	60 / 60	minus	None
JLOC1	JLOC1_10287.1	2330	8e-25	2255 - 2314	100	60 / 60	plus
Harvest35	U35_36429	410	3e-25	344 - 403	100	60 / 60	plus
Harvest35	U35_5564	738	3e-25	641 - 700	100	60 / 60	plus

Contig Sequence (738 bp)

>U35_5564 738 Hv_44K_v2
GACACCGATACTTACGTGCCGAACCCTGATTACTACAGTGCCTTGTTGTGGCACCGATTA
ATGGGGAACGGAGTTCTTTCCATAGACTTTGGCGGCACTTCATACTTGCGTGCCTATGCG
CATTGCGGAAAGCAGAAGGGCGGTATCGCTCTCCTCTTGATCAACCTGAGCCAAAACATG
GGGTCCATGGTCACGGTCAGGAACGACCTCAACGTCGGCATAGCGCAAGGGCAGGGGATC
ACAAGGGACAGCTCCTTTGTCCATGGCCTGAAGAGGACGGTCTCCTGGGTCGGGAGCAAA
GCCTCTGATGGGCTGGAGAAGAGGGAAGAATATCACCTGACGGCTCAAGATGGGAACCCT
CTTGCGCGCACCATGCTGCTGAACGGAGTTCCTCTGGAGCTCACTGAAGATGGTGACATC
CCTCCGATGTACCCGGTGCAGGTTTCAGCCAGTTCACCGATCTATGTCGCCCCGCTGTCC
ATTGCCTTCGTCGTCTTCCCTGATTTTGAGGCTGACGCTTGCTAGCAATGATCAACTGTA
GTTTTTAGATAGGATACCATGCGAGATTTTCAGCTACAACAATATAGCCCTTCTCAACTA
TATACGGATACTGAAAATGATGTGTTGATGTGTTCTGCCCCAATTGGGCCATCATATATA
GAGTTACTTGATGTTCAACACTTTCACAATAAAGAAGCTCAAAAACTCTCCTGGTATTTT
CAAAAAAAAAAAAAAAAA

Homology of Contig U35_5564 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g38920.2	540	5e-94	protein\|heparanase-like protein precursor, putative, expressed
Brachypodium v1_2	Bradi4g03680.1	539	1e-108
Arabidopsis v10	AT5G61250.2	539	6e-55	\| Symbols: AtGUS1, GUS1 \| glucuronidase 1 \| chr5:24632294-24634597 REVERSE LENGTH=539