barSeed - Barley Seed Development Database

Probe CUST_13694_PI390587928

Source Contig U35_5565

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13694_PI390587928	Hv_44K_v2	GACAACAACTAAACTGTACCAAGTGCTGTTATACAGTTTCTTTATGAGTGTAAGAGTTTC	1497	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.198	2.031	1.248	0.733	0.252	0.294
Raw	448.847	647.238	338.247	318.939	38.085	48.289

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359952	1964	2e-24	1896 - 1955	100	60 / 60	plus	ABC12560
MLOC	MLOC_57860.5	1806	2e-24	1739 - 1798	100	60 / 60	plus	ABC12560
MLOC	MLOC_57860.10	1710	2e-24	1561 - 1620	100	60 / 60	plus	ABC12560
MLOC	MLOC_57860.3	1460	2e-24	1389 - 1448	100	60 / 60	plus	ABC12560
MLOC	MLOC_57860.4	1450	2e-24	1379 - 1438	100	60 / 60	plus	ABC12560
MLOC	MLOC_57860.6	1768	2e-24	1546 - 1605	100	60 / 60	plus	ABC12560
MLOC	MLOC_57860.7	1870	2e-24	1648 - 1707	100	60 / 60	plus	ABC12560
MLOC	MLOC_57860.8	1778	2e-24	1556 - 1615	100	60 / 60	plus	ABC12560
JLOC1	JLOC1_37575.5	1446	8e-25	1160 - 1219	100	60 / 60	plus
JLOC1	JLOC1_37575.4	1591	8e-25	1305 - 1364	100	60 / 60	plus
JLOC1	JLOC1_37575.3	1601	8e-25	1315 - 1374	100	60 / 60	plus
JLOC1	JLOC1_37575.2	1836	8e-25	1550 - 1609	100	60 / 60	plus
JLOC1	JLOC1_37575.1	1826	8e-25	1540 - 1599	100	60 / 60	plus
Harvest21	ABC12560	1612	3e-25	1498 - 1557	100	60 / 60	plus	ABC12560
Harvest35	U35_5565	1642	3e-25	1498 - 1557	100	60 / 60	plus

Contig Sequence (1642 bp)

>U35_5565 1642 Hv_44K_v2
TGATCGCGCCCGCGCTGCAGGTGGCCGTCTGGGCGTGCATGGTGATGTCGGTGATGCTGG
TGGTGGAGGCCCTGTACAACTGCGTGGTCAGCCTCGGCGTCAAGGCCGTCGGCTGGCGCC
CCGAGTGGCGGTTCAGGTGGGAGCCCCTCGCCGGCGGCGACGAGGAGAAGGGGGGCGCCC
ACTACCCCATGGTCCTGGTCCAGATACCCATGTACAATGAGCTGGAGGTGTACAAGCTGT
CGATAGGGGCGGCATGTGAGCTCCAGTGGCCAAAGGACAGGATAATCGTCCAAGTGCTGG
ACGACTCCACTGATCCGTTCATCAAGAACTTGGTGGAGCTTGAATGCGAAAGCTGGGCGG
TCAAGGGTCTGAACATCAAGTATACCACGAGAACCAGTCGGAAGGGGTTTAAAGCAGGAG
CCCTGAAGAAGGGAATGGAATGTGACTATGCCAAGCAGTGCGAATATGTTGCCATATTTG
ATGCGGATTTCCAGCCTGAAGCGGACTTCCTTCTCAGAACAGTCCCATTCTTCGTGCACA
ATCCACAAGTTGCTCTTGTTCAAGCTCGGTGGTCCTTTGTGAATGACACGATGAGCCTGT
TGACACGGGTACAAAAGATGTTCTTTGATTACCATTTCAAAGTTGAGCAAGAAGCCGGGT
CAGCAACCTTTTCCTTCTTCAGCTTCAATGGAACCGCTGGAGTGTGGCGTACAGCAGCCA
TCAAAGAGGCGGGAGGTTGGAAGGACCGCACTACAGTTGAAGACATGGACTTGGCAGTTC
GAGCAACCTTGAAGGGTTGGAAATTTATATATGTTGGGGATATCAGAGTTAAGAGTGAAT
TGCCATCCACTTACAAGGCCTACTGTCGACAGCAATTCCGGTGGTCTTGTGGTGGTGCAC
ATTTATTCCGAAAGGTAGCAAAAGATATTTTGACTGCCAAGGATGTATCTCTTGTCAAGA
AATTCCATATGCTCTATAGCTTCTTCTTGGTTCGGAGAGTTGTGGCCCCTACGGTCGCAT
GTATTCTCTACAATATCATAGTTCCGATATCAGTCATGATACCAGAACTATACCTACCAG
TCTGGGGCATCGCATATATTCCCACGGTACTTTTAGTGGTCACAGCTATTAGACATCCAA
AAAATATACACATTCTGCCATTTTGGATTTTGTTCGAGAGTGTGATGACAATGCATCGCA
TGAGAGCTGCACTGTCTGGTCTATTCGAATTATCGGAGTTTAACGAGTGGGTCGTGACAA
AGAAAACAGGGAACAATTTTGAAAATAATGAAGTTCCCTTGTTACAGAAAACAAGGAAAA
GATTAAGAGACAGGGTTAATTTCCGTGAGATTTTATTTTCAGCGTTTCTTTTCTTCTGTG
CGTCATACAACCTTGTATTCCCTGGCAAGACTAGCTACTATTTTAATCTCTATCTCCAAG
GACTAGCATTTGTATTTCTCGGGCTAAACTTCACTGGCACTTGCAGTTGCTGTCAATGAC
AACAACTAAACTGTACCAAGTGCTGTTATACAGTTTCTTTATGAGTGTAAGAGTTTCAAA
CATTTCAGATGATAGCATTAGATGCATAACTTTGTTTTTTTAACTAACAACAGTTTCCTT
GTCTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_5565 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os07g43710.1	586	protein\|CSLA7 - cellulose synthase-like family A; mannan synthase, expressed
Brachypodium v1_2	Bradi1g20500.1	583
Arabidopsis v10	AT5G03760.1	533	\| Symbols: ATCSLA09, CSLA09, ATCSLA9, CSLA9, RAT4 \| Nucleotide-diphospho-sugar transferases superfamily protein \| chr5:985910-990087 REVERSE LENGTH=533