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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_13689_PI390587928Hv_44K_v2GTGAGCGAAAATGTTTGCGGTACTCATGTTGTTTCTGAGGTTAGGAGCCTTTTAGTTAGA853GeneList: salmon
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 9.7327.3421.6850.7660.3690.328
Raw 179.787226.74344.20932.3513.6734.217



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest21ABC138888731e-23813 - 8739860 / 61plusABC13888
Harvest35U35_55709133e-25854 - 91310060 / 60plus



Contig Sequence (913 bp)

>U35_5570 913 Hv_44K_v2
ACAAACCCGATAAGAAAATGGCGGCTTGTGCTGCGCCCCCCTACGTCCGCATCTCCTGCT
CCACACCTTCACCGACCGCTCTCCGCCGGCCACGCCGCCGGCGCGTCCCCTCCGCCCGAT
GCTCCCTCGCCGCGGCCCCCGGCCTCCGGGCGCCGCCGGAGCTCGTCGACTCCATCCTCT
CCAAGGTGAGGGGGACTGACCGGGGCGTGCTGCTGCCGGAGGAAGGCCACCAGGAGGTCG
CCGACGTCGCGCAGCAGCTCGGCAAGTACTGCATCGACGAGCCCGTCAAGTCCCCGCTTA
TATTCGGAGACTGGGAGGTGGTGTATTGCTCGGTGGCGACGTCCCCAGGAGGTATTTACC
GGACCCCTCTCGGCCGGCTGGTGTTCAAGACCGACGACATGGTTCAGGTGGTGGAAGCCC
CCGACATCGTCAGGAACAAGGTCTCCTTCTCCATCTTTGGCCTTGATGGCGCCGTGTCTT
TGAAAGGCAAGCTGAATGTATTAGACAGTAAGTGGATTCAGGTCATATTTGAGCCCCCGG
AACTGAAGGTAGGCTCCTTGGGTTTCCGATACGGGGGCGAGAGCGAAGTCAAGCTGGAAA
TCACCTATGTCGACGAGAAGATCAGGCTCGGGAAAGGATCCCGAGGCTCGCTTTTCGTCT
TCCTAAGACAAGATTAGAAGGTTAGGCACGTATGGCACCATGCCACCATTGCATACTTTC
ATGTGCTCGACGCCACAAGGGATATCAGACATATGGGTGTCTGCACAACTGCTTGCACAT
GTAAATTCAGAGATAAAGCCCACAAAGTAGTTTTTTATGATATTAATTTCTACCTGAAGC
AGACTGCCTTGTTGTGAGCGAAAATGTTTGCGGTACTCATGTTGTTTCTGAGGTTAGGAG
CCTTTTAGTTAGA



Homology of Contig U35_5570 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os04g51792.12207e-114protein|PAP fibrillin family domain containing protein, expressed
Brachypodium v1_2Bradi5g20970.12225e-121
Arabidopsis v10AT5G19940.12394e-78Plastid-lipid associated protein PAP / fibrillin family protein | chr5:6739693-6740661 FORWARD LENGTH=239