barSeed - Barley Seed Development Database

Probe CUST_13684_PI390587928

Source Contig U35_5575

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13684_PI390587928	Hv_44K_v2	TTTTTGTGGATGTGCCCCTCGGCAGATGTGCTAGTACTAATGCAATGTTAAGTGGCACTT	1215	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6694.1	3643	2e-24	44 - 103	100	60 / 60	minus	ABC12752
MLOC	MLOC_6694.2	1301	2e-24	26 - 85	100	60 / 60	minus	ABC12752
JLOC1	JLOC1_4369.2	1287	8e-25	1184 - 1243	100	60 / 60	plus
JLOC1	JLOC1_4369.1	1309	8e-25	1206 - 1265	100	60 / 60	plus
Harvest21	ABC12752	1207	3e-25	1143 - 1202	100	60 / 60	plus	ABC12752
Harvest35	U35_5575	1280	3e-25	1216 - 1275	100	60 / 60	plus

Contig Sequence (1280 bp)

>U35_5575 1280 Hv_44K_v2
GGCCTTACGGCCGGGGGAATATCATTTCCCCTTGTTTCCGGTGCCCCCGCGGGGTCTTGG
GTCCTTTCGTGCCGCTCTCCGAGCTGCTAGGGTTTCGCATCGCCGCCGTTGGCATGGCCG
ACTGGCCTCTCCCATCCAACGGGGTGCGGGCGGACGCTGTGGAAGAAGGTCACCTAGGGC
CTCGCCGCCCAGTGGATGCCGCCGGAAAGCGGGCCCCCCAGGGCCCCAAATGGACCAGAG
AACCACAGCTCGGGGACCTCGTCCTCGCCAAGGTCAAGGGTTATCCTTTCTGGCCAGCCA
AGGTGAGCAGGCCGGAGGATTGGAATCAGGAGCCTGCTCCACGCAAGTTCTTTGTCGTCT
TTCTCGGCACCAAAGAGATTGCTTTTGTAGGTTTGCAAGATCTCTTGCCATTTACAGAAA
AGGTGAAGCAAGACTTGGTAAATAAAGCTCGAGAGAAGCGATTCCCGGAAAGACATGTGA
AAGGTCTTGAAGTAGCCTTAGTGGAGGTACTCAAGGCCTATGATGAACTCCCCAAATCAT
CTGAAACTGCCAATGGTTTGCTGCCTGATCCAACTCCTGATCAGATTGCAAAACCTACAG
AGCCCCTTGCAAAGCGACATGCTGATAGTGGGACTCCAAAACTGGAACAAATTGATGATT
TCCATGGGAGGTACCCGAGCCTCAAAAGAAAAGACAGAGATGTCCCAAAATCATCTGAAA
CTGCCAATGGTTTGTTGCATTATCGAACTCCTGATCCAATTGAAAAACCTGTAGAGCCCC
TTGTAAAGCAACCTGTTGATGGTGGCACTCCAAAACTGGGACAAACTGATGATTCCCATG
GGAGGTACCTGAGCCTCAAAAGAGAACAGAGAGTTCTGTTTGCTGGCATTGAGGAGAGGA
ACTTGGAGGATCCCTATGGCATACCAAAATGCATTGCTGTGCTTGAAGGATTGCCGGATT
TACAAATGGAAGATACGCTGAAAGCAGCTGACCTCTTCACCGACAGCAAGGGCAATCGAG
AAGTATTCCTCTCTTTTTCAAGTAATGCATTACGGCTTGGCTGGGTAAGAAGAAAAATTC
AGAACACCTAGTGAAATGGCTATGGAAATATGCCTCTTGGACAAGACTTTTGTGTCAATG
AGAAGAGTAGCTTGTGTTTGCTGTTCTAGACACTTGTAGCAAATTATCATCTAGTGCTAA
GGTGTTCTGCTAACTTTTTTGTGGATGTGCCCCTCGGCAGATGTGCTAGTACTAATGCAA
TGTTAAGTGGCACTTGATCA

Homology of Contig U35_5575 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g12902.1	1438	2e-59
Arabidopsis v10	None