barSeed - Barley Seed Development Database

Probe CUST_13683_PI390587928

Source Contig U35_5576

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13683_PI390587928	Hv_44K_v2	CCCAAAATCATCTGAAACTGCCAATGGGTTTGTTGCATTATCGAACTCCTGATCCAATTG	632	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6694.1	3643	3e-22	557 - 615	98	59 / 60	minus	ABC12752
MLOC	MLOC_6694.2	1301	3e-22	539 - 597	98	59 / 60	minus	ABC12752
JLOC1	JLOC1_4369.2	1287	1e-22	672 - 730	98	59 / 60	plus
JLOC1	JLOC1_4369.1	1309	1e-22	694 - 752	98	59 / 60	plus
Harvest21	ABC52286	693	5e-23	599 - 657	98	59 / 60	plus
Harvest21	ABC12752	1207	5e-23	631 - 689	98	59 / 60	plus	ABC12752
Harvest35	U35_5576	696	3e-25	633 - 692	100	60 / 60	plus
Harvest35	U35_5575	1280	5e-23	704 - 762	98	59 / 60	plus

Contig Sequence (696 bp)

>U35_5576 696 Hv_44K_v2
GCCCCCGCGGGGTCTTGGGTCCTTTCGTGCCGCTCTCCGAGCTGCTAGGGTTTCGCATCG
CCGCCGTTGGCATGGCCGACTGGCCTCTCCCATCCAACGGGGTGCGGGCGGACGCTGTGG
AAGAAGGTCACCTAGGGCCTCGCCGCCCAGTGGATGCCGCCGGAAAGCGGGCCCCCCAGG
GCCCCAAATGGACCAGAGAACCACAGCTCGGGGACCTCGTCCTCGCCAAGGTGAGCAGGC
CGGAGGATTGGAATCAGGAGCCTGCTCCACGCAAGTTCTTTGTCGTCTTTCTCGGCACCA
AAGAGATTGCTTTTGTAGGTTTGCAAGATCTCTTGCCATTTACAGAAAAGGTGAAGCAAG
ACTTGGTAAATAAAGCTCGAGAGAAGCGATTCCCGGAAAGACATGTGAAAGGTCTTGAAG
TAGCCTTAGTGGAGGTACTCAAGGCCTATGATGAACTCCCCAAATCATCTGAAACTGCCA
ATGGTTTGCTGCCTGATCCAACTCCTGATCAGATTGCAAAACCTACAGAGCCCCTTGCAA
AGCGACATGCTGATAGTGGGACTCCAAAACTGGAACAAATTGATGATTTCCATTGGGAGG
TACCCGAGCCTCAAAAGAAAAGACAGAGATGTCCCAAAATCATCTGAAACTGCCAATGGG
TTTGTTGCATTATCGAACTCCTGATCCAATTGAAAA

Homology of Contig U35_5576 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g12902.1	1438	1e-52
Arabidopsis v10	None