barSeed - Barley Seed Development Database

Probe CUST_13682_PI390587928

Source Contig U35_1468

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13682_PI390587928	Hv_44K_v2	GATGGATCGCCTGTAGAACAAGACCGTGAATCAAGTGAACTTGTGATGTATTGATCGATC	2095	GeneList: yellowgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.690	2.601	1.848	1.104	0.406	0.438
Raw	7203.763	42069.067	25629.700	24673.043	3083.570	3659.823

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44080.1	2243	2e-24	45 - 104	100	60 / 60	minus	ABC05164 ABC44958
MLOC	AK361923	2163	7e-23	2088 - 2147	98	59 / 60	plus	ABC05164 ABC44958
JLOC1	JLOC1_28535.1	2268	8e-25	2172 - 2231	100	60 / 60	plus
Harvest35	U35_36474	197	3e-25	105 - 164	100	60 / 60	plus
Harvest35	U35_1468	2177	3e-25	2096 - 2155	100	60 / 60	plus
Harvest35	U35_37398	559	6e-22	16 - 69	100	54 / 54	minus

Contig Sequence (2177 bp)

>U35_1468 2177 Hv_44K_v2
ATCTCTCTCTCTCTCTCTCTCTCAACACGAGCATCATTCACTCCTCCTTCCTCTTCTTCA
ACCTCATCCGCCCCCCGAACCCCGCGTCGTCCGTCGCCGCGTCCACCATGTGTGGGATTC
TGGCCGTCCTCGGCTGCGCCGACTCGTCGCAGGCTAAGAGGGCTCGCGTCCTCTCGTGCT
CCCGCAGGCTGAAGCACAGGGGACCGGACTGGTCCGGGCTGTTCCAGTGCGAGGGCAACT
TCCTGGCGCAGCAGCGGCTCGCCGTCGTCTCCCCGCTCTCCGGTGACCAGCCCCTCTACA
ACGAGGACCGTACCGTCGTCGTCGTGGCCAATGGAGAAATCTACAACCACAAGAAGATCC
GGAAGCAGTTCGCCGCCAAGCACACCTTCACCACCGGCAGCGACTGCGAGGTCATAATCC
CTCTGTATGAGGAGTACGGCGAGAACTTCGTCAACATGCTGGACGGCGTCTTCTCCTTCG
TACTGTACGACACCCGCAACAAGACGTACATGGCAGCACGCGACGCCGTCGGCGTCAACC
CCCTCTACTTCGGCCGGGGCAGCGACGGCTCCGTCTGGATTGCGTCTGAGATGAAGGCGC
TCCACGAGGACTGCCCAACGTTCGAGCTCTTCCCTCCGGGGAACCTGTACTCGAGCGCCG
CCGGAGGGTTCCGGCGGTGGTACAACCCACAGTGGTTCGCCGAGCACGTCCCGGCGACGC
CGTACCAGCCCCTCGTCCTCAGGGAGGCATTCGAGAAGGCCGTCATCAAGAGGCTCATGA
CTGACGTGCCCTTCGGCGTTCTCCTCTCCGGTGGCCTCGACTCCTCCCTCGTCGCCTCTG
TGACCAAGCGCCATCTCATCGAGACTGAAGCCGCCAAGAAGTTTGGAACTGAGCTCCACT
CCTTTGTCGTTGGCCTGGAGGGGTCACCTGACCTGAAGGCCGCGAGAGAGGTTGCTGACT
ATCTGGGAACCATCCATCACGAGTTCCATTTCACTGTCCAGGATGGTATCGACGCCATCG
AGGAGGTGATCTACCACAACGAGACGTACGACGTGACGACGATACGTGCGAGCACGCCGA
TGTTCCTGATGGCGCGCAAGATCAAGGCGCTCGGTGTTAAGATGGTGCTGTCAGGGGAAG
GCTCCGACGAGCTCCTTGGCGGCTACCTCTACTTCCACTTCGCCCCCAACAAGGAGGAGT
TCCACAAGGAGACCTGCCGCAAGGTGAAAGCGCTTCATCAGTATGACTGCCTGCGCGCCA
ACAAGGCGACGTCCGCTTGGGGGCTGGAAGTCCGCGTGCCGTTCCTCGACAAGGAGTTCA
TCGACGTCGCCATGAGCATGGACCCCGAGTGGAAACTGTACGATGCCGATCTTGGCCGCA
TCGAGAAGTGGGTGTTGAGGAAGGCTTTCGACGACGAGAAGGAGCCATACCTGCCAAAGC
ATATCTTGTACAGGCAGAAGGAGCAGTTCAGCGACGGCGTTGGCTACAACTGGATCGATG
GCCTCAAGGCTTTTACCGAGCAGCAGGTCACTGACGAGATGATGAAGAACGCCGCAGAGG
AGTACCCGTACAACACGCCCATCAACAAGGAGGCCTACTACTACCGGATGATCTTCGAGA
GGCTCTACCCTCAGGAGTCGGCGAGGGAGACGGTGCCGTGGGGTCCGAGCATCGCGTGCA
GCACGCCGGCGGCCATCGAGTGGGTGGCCCAGTGGAAGGCCTCCAACGACCCCTCCGGCC
GGCTCATCGCCTCCCACAACGATGCCACCCCCGCTCATGCCCACGCCAACGGCAACGGTA
ACGGGGCGGTGGCCAACGGGAAAGCCAACGGGAACGGCACGGCGAACGGGAACGGGAACG
CCAACGGGACTCTGGTCCCGTGCTAGCCGTCGCCGCTCGCGCTAGCTGGTTCGGCCGTGG
TGGGTGCGTGTGCGTGTGCGTGTGCGTGTGCGCGTGTCCTCGGACTGATGAGCCATATGC
CATTGGCGCCGCGGCCGGTGCTGTTGTTGTGTACGTGTTGTAGTACGTTTCTTCAGTGTT
GTTGTGTGTGCGTGTGCGTGGGATGGAGCTCGCGGTCCGAGCATGTGGCGGGGGTGATGG
ATCGCCTGTAGAACAAGACCGTGAATCAAGTGAACTTGTGATGTATTGATCGATCAAAAA
AAAAAAAAAAAAAAAAA

Homology of Contig U35_1468 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g18130.1	605	protein\|asparagine synthetase, putative, expressed
Brachypodium v1_2	Bradi1g65540.1	601
Arabidopsis v10	AT3G47340.1	584	\| Symbols: ASN1, DIN6, AT-ASN1 \| glutamine-dependent asparagine synthase 1 \| chr3:17438136-17441043 REVERSE LENGTH=584