- Probe CUST_13681_PI390587928
- Source Contig U35_1469
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_13681_PI390587928 | Hv_44K_v2 | GTCCGAGCATGTGGCGGGGGTGATGGATCGCCTGTAGAACAAGAACGTGAATCAAGTGAA | 637 | GeneList: yellowgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.742 | 2.629 | 1.909 | 1.074 | 0.437 | 0.504 |
| Raw | 9030.604 | 49435.833 | 30825.467 | 27810.540 | 3859.103 | 4893.820 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK361923 | 2163 | 2e-24 | 2067 - 2126 | 100 | 60 / 60 | plus | ABC05164 ABC44958 |
| MLOC | MLOC_44080.1 | 2243 | 7e-23 | 66 - 125 | 98 | 59 / 60 | minus | ABC05164 ABC44958 |
| JLOC1 | JLOC1_28535.1 | 2268 | 4e-23 | 2151 - 2210 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC05164 | 2164 | 3e-25 | 2036 - 2095 | 100 | 60 / 60 | plus | ABC05164 |
| Harvest21 | ABC44958 | 409 | 6e-22 | 38 - 97 | 97 | 58 / 60 | minus | ABC44958 |
| Harvest35 | U35_1469 | 754 | 3e-25 | 638 - 697 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_48806 | 537 | 4e-24 | 32 - 89 | 100 | 58 / 58 | minus | |
| Harvest35 | U35_37398 | 559 | 1e-23 | 31 - 90 | 98 | 59 / 60 | minus | |
| Harvest35 | U35_36474 | 197 | 1e-23 | 84 - 143 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_1468 | 2177 | 1e-23 | 2075 - 2134 | 98 | 59 / 60 | plus |
Contig Sequence (754 bp)
>U35_1469 754 Hv_44K_v2 CATACCTGCCAAAGCATATCTTGTACAGGCAGAAGGAGCAGTTCAGCGACGGCGTTGGCT ACAACTGGATCGATGCCCTCAAGGCTTTTACCGAGCAGCAGGTCACTGACGAGATGATGA AGAACGCCGCAGAGGAGTACCCGTACAACACGCCCATCAACAAGGAGGCCTACTACTACC GGATGATCTTCGAGAGGCTCTACCCTCAGGAGTCGGCGAGGGAGACGGTGCCGTGGGGTC CGAGCATCGCGTGCAGCACGCCGGCGGCCATCGAGTGGGTGGCCCAGTGGAAGGCCTCCA ACGACCCCTCCGGCCGGCTCATCGCCTCCCACAACGATGCCACCCCCGCTCATGCCCACG CCAACGGCAACGGTAACGGGGCGGTGGCCAACGGGAAAGCCAACGGGAACGGCACGGCGA ACGGGAACGGGAACGCCAACGGGACTCTGGTCCCGTGCTAGCCGTCGCCGCTCGCGCTAG CTGGTTCGGCCGTGGTGGGTGCGTGTGCGTGTGCGCGTGTCCTCGGACTGATGAGCCATA TGCCATTGGCGCCGCGGCCGGTGCTGTTGTTGTGTACGTGTTGTAGTACGTTTCTTCAGT GTTGTTGTGTGTGCGTGTGCGTGGGATGGAGCTCGCGGTCCGAGCATGTGGCGGGGGTGA TGGATCGCCTGTAGAACAAGAACGTGAATCAAGTGAACTTGTGATGTATTGAAAAAAAAA AAAAATATTTCCTCAAAAAAAAAAAAAAAAAAAA
Homology of Contig U35_1469 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g18130.2 | 489 | 3e-68 | protein|asparagine synthetase, putative, expressed |
| Brachypodium v1_2 | Bradi1g65540.1 | 601 | 4e-73 | |
| Arabidopsis v10 | None |