barSeed - Barley Seed Development Database

Probe CUST_13680_PI390587928

Source Contig U35_1470

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13680_PI390587928	Hv_44K_v2	GACTTGTATTGGAACGAGCAACAGCAGTGTGGATTTGAAAAAATGATGATCTGTTAAAAA	3055	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.136	1.816	1.669	0.904	0.304	0.303
Raw	917.871	2321.423	1846.813	1617.460	183.854	203.320

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_35449.1	3482	1e-22	3171 - 3226	100	56 / 56	plus
Harvest21	ABC09841	1127	5e-23	45 - 100	100	56 / 56	minus	ABC09841
Harvest35	U35_1470	3183	3e-25	3056 - 3115	100	60 / 60	plus

Contig Sequence (3183 bp)

>U35_1470 3183 Hv_44K_v2
TCGAGCACTGTTGGCCTATGGGAAGCAAACAACACAGAAACGCCCAGCAGCAGCTGCTGC
TGCACACCCGAGCCGCCCCCCGCACCCCTATCCAGTCCACAAACGCACACTCCCACGCGC
AGCCAGCGGAGCAGCGCACTGACTTCACCGCCGCAGCGGCTCACCCGAGGCGGCGCCGGC
GGCCGGAGGAGGAGGGGAGGTGAGGAGCGAGCGAGCCACCCGATCCGACCATGACCAAGT
CCAAGAACGGCTGCCTCAAGATCCTCTGCGGCGGCGCCGGATCCGACGCCACCGCCGGCT
CCGACCCCGAGACCGACGCCCACGCCGACGAGAGCAAGGCCATCTCAGATAAAAGCAGAT
GGAGCTTTCGAAGGAGGTCTACAAGGCACCGAGTTCTGAAGAATTCTGATATATCCGAGC
CTGAAACTCTAAGTTCGAGCAAAGCAAAAGCTGATGTTGCTCCAAGCAACAATGTCTACT
CTTCAACATACTCTTATTCCTCAGAGAAGCCCCTGCATCTAGAGAAGCCAGATGAGAAGA
TTGTGCTTCAAGAGAAGCTAGATGAGAAGTCTGTGCACGAAGAGAAGCCCGATGAAAAGC
AGACAGAGGAGACAACTGAAAAGCCAGTAGACCACATAATTGAAAGGTCAATTGAACAGC
CAGATGAAAAGATAACTGAGACACCAAGCAAAGAGCCGGCCGAAAGGATGCCCGAAAAAC
CAGTTGAAGAGCCAGCTGAAGAGGATGTTGAGAAACTTGATGAAAAGCCAGATGAAAGTA
TCTCTGTTTCAGCAACTGAGGTGAAGCAGGATGAAACTGCCTCACTTGTTGATAGCAGCA
TTCCAGATCCCGAGGAAGATCATGTGGAGTCTGCTGCTATTGTCATTCAGTCTGGCATCA
GAACGTACAACGCAAAGCAAGAACTATCGAATCATAAGGATCTTGTGAAACTGCAAGCTG
TGATACGTGGCCATCTAGTTAGGAGGCAGGCTGCAGAATCATTACAATGCTTGCTTGCTA
TTGTTAAAACTCAAGGGCTTGTCCGGACTCATCAAGCACAACAATCTTCAGGGAGGTTTC
AGGATACTTTGGTCCGTTCTTCAAGTGAGAAGTTGCTTCACAATGGATTTGCTCTCAAGC
TCATGGACAGCATGTCAACTTCCAAATCCATGAACATAAGATGTGATGCTTCTGAAACTG
ATGCTACCTGGAAATGGATGGAGAGGTGGACAACTCTGATTCTGCCAACCACTGAAGGCC
ACTTGCTTGAAAATGCAGAAAATAGTGGGCTGGTGGTTGAAAAGATGGAAGAAGATGCTC
AGCATGAAGAAAAGGCTGTCCCTTTGGACTCAGACATTTCTTTCCCCAAGTTAGCGCCTG
ATGATGTGGAAGAGACACTAAGGCCATCTGATTCTAGTGCCTTTGTGGAAGAGACACTAA
GGTCATCTGATTCTAGTGGACTGGAGGCTCCTGACCGTGACCCAGAGGAAACCTCTTTGT
TGGAAATCAAATGTGATTCTGCACCAGAGTTGATCGAAAAGGTCGATGATGATGCCGAAC
AGTTGACTGATTCAAAAACAGAGAATGTCGTGGAGCAGTCTTTCGACTTCTCTGGTCAGC
AATCTACCCAAACTAATCCATCAAGGGAACCCAGTCCTGTTCCTGAAAAATCTGAATACC
CCAGTGAGGATGTTATGGGTAATCTTGAGCAGTCACCGGAGATGGAAGCTAGAAGTGCAG
CAAGAAAGGCCTGCAATCCAGCATTTGCTGCTGCACAGATGAAATTCGAAGAGCTGACTT
CAGCAGTCAGTAGGTCCAACAGTTCATCTTTTCTGGATGCACCAAGCAAACCGAAGGTGC
ACACTCCCCGTTCACTGGGAGGTACCTCACCCAAGCAAAATATTGAAACAGTCGTACCCG
GAAGCGCAGTTGGTCATGATGCTAAAATCATACCTGCTGCTTCAGAATGTGGGACTGAGA
TTTCAATTTCATCTACACTTGACTCGCCAGATAGATCAGAGGCTGATGGTGGTGAGATTG
TAATGGAGATGGGAGCTCTTGGAGGTCGGAACTACGCCAGTGAGAATGCTGAGAAAGATA
CCCATGTTTTACATTCTGAAGTGAAGGACACCTCCGAAGAAGTCGTCCAGCCCGAGAAAG
AGGAAGAATTGAATGGTGATGTTCCTAACCCTGCCATTGCCACAGATCCTGTCCTTGACC
AAGCACATGTTGGATCAGGAAAGCCAGATTTGCATGACCAAATAGAGGAGTCTATAGGAT
CTTATGCCAAGTCACCTGAGGGAACTCCCATGAGCCGAACCACTTTCGCGGAATCGCAAT
GCACACCATCAAGTGAGGTCTCTGTCAATACCAACAAGAGCAAGAGCAAGAGCAAAAAAT
CGAAGTCTCATGCAAGCAGAAGGTCCCTGACTAGTCCCAGCAGCAATTCAGTCGGCCGAA
GCAGCACGGATAACCTGTCAAAGGATTATAAGCATGCGAAGAGAGAGAGCTCAGGCAAGG
TTGCCAAGTCTGAAAACGCTGATCAAGAACCTCGCATGAGCAACAGCACTCCATTGCCAA
GTTACATGCAGTTCACAGAATCTGCAAGAGCAAAGGCGGCCGCTCTATCCCCGAAGTTAA
GCCCAGACGTGCAAGACAACAACCCGAGGAAGAGGCATTCTTTGCCCATCACAAACGGTA
AAAACGAGACATCTCCTCGCATGCAACGGTCATCTTCCCAGGCTCAGCAAAATGTGAAGA
GCAGCGTTGCTGTTCCTCACAATCCATCTGATAAGAGGTGGAATATATGATGGATGGCAG
CACATCGACGAGGTGCCATCAAATCAAATATCTAGAAGCACTCATCTCGCGCCCTTGTTT
TATCGCCGCAGGAGGTCCCTCTAATTCGTCAGTCGTTTCTTAATATTTTTTCCTTGGAAT
ACTGATGGAGAAGAGCAGCAGCTTCATCATATATGTACATTTGTTGGTTGATCTTATTGG
TTGTGTTATTTGACTGATAGTGGTATTTCTTTTGTGTGTAATACATATCCTACTTGACTT
GTATTGGAACGAGCAACAGCAGTGTGGATTTGAAAAAATGATGATCTGTTAAAAAAAAAA
AAAAAAATGCCACTGATGTCAAATGAAGTTCATGTTGGTTTGGATCAAAAAAAAAAAAAA
AAA

Homology of Contig U35_1470 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g56740.1	894	0.0	protein\|IQ calmodulin-binding motif family protein, putative, expressed
Brachypodium v1_2	Bradi5g25090.1	851	0.0
Arabidopsis v10	None