barSeed - Barley Seed Development Database

Probe CUST_13660_PI390587928

Source Contig U35_1484

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13660_PI390587928	Hv_44K_v2	GACACGGTTTAATTCAGACCGTCAAAGAATAATTGCCACATTCTTGCTATTGGAAAATAT	899	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.750	2.300	1.041	0.722	0.265	0.157
Raw	453.410	425.657	174.439	188.273	25.235	16.290

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20759.1	1393	2e-24	1324 - 1383	100	60 / 60	plus	ABC04217
MLOC	MLOC_20759.2	1405	2e-24	1319 - 1378	100	60 / 60	plus	ABC04217
JLOC1	JLOC1_14390.1	1528	8e-25	1372 - 1431	100	60 / 60	plus
Harvest35	U35_1484	988	3e-25	900 - 959	100	60 / 60	plus

Contig Sequence (988 bp)

>U35_1484 988 Hv_44K_v2
GGCCCTATGGCACCACCCATTGGAAAAGGCCACCGTTCTCTGAATCTACACTGAGGAAAG
AGCTCGGGCTCTACGCCAATGTCAGACCTTGCAACAGCCTCCCGGGCTACAAGACCAGAT
ACGACGACGTGAACCTCGTGACCATCCGCGAGAACACGGAAGGGGAGTACAGCGGCCTCG
AGCACCAGGTCGTCAGGGGCGTCGTGGAAAGCCTCAAGATCATCACCCGCCAGGCTAGCC
TGAGGGTGGCGGAGTACGCTTTCCATTACGCCAAGGCCAATGGCAGGGAGAGGGTCTCGG
CGATACACAAGGCCAACATCATGAGGAAGACAGACGGGCTTTTCCTCCAGTGCTGCCGCG
AGGTGGCCGCCAAGTACCCTGAGATCAAGTACGAGGAGGTGGTCATCGACAACTGCTGCA
TGGAGCTCGTCAAGGACCCTGGCACGTATGATGTGCTGGTGATGCCCAACCTGTACGGCG
ACATTATCAGTGATCTGTCCGCCGGTTTGATCGGGGGCCTGGGCTTGACTCCCAGCTGCA
ACATTGGTGAGGGCGGCATCTGTCTGGCGGAGGCTGTTCATGGCTCTGCACCTGATATCT
CTGGCAAGAACCTTGCAAACCCAACTGCTCTTATGCTCAGTGCTGTTATGATGCTGCGCC
ACCTGCATTTCAACAACCAGGCAGACCGGATCCACAATGCCATCCTACGCACCATCGCCG
ACGGCAAGTACAGGACCGCTGATCTTGGTGGCAAGTCGTCGACATCGGACTACACAAAAG
CAGTCTGCGATCATATCTGATTGAGCACACAGGAGTTCCTGCTCGTTTTCTCTTTACTTG
TTTATTTATTTGTCTCCCCTGTTTTTTGTTGCATGCCTCGGTTTCTCTAGATGACCGTTG
ACACGGTTTAATTCAGACCGTCAAAGAATAATTGCCACATTCTTGCTATTGGAAAATATT
TTATCTGCGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_1484 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g16900.3	321	5e-168	protein\|dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi3g43300.1	363	4e-168
Arabidopsis v10	AT5G03290.1	374	4e-152	\| Symbols: IDH-V \| isocitrate dehydrogenase V \| chr5:794043-795939 FORWARD LENGTH=374