barSeed - Barley Seed Development Database

Probe CUST_13656_PI390587928

Source Contig U35_1486

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13656_PI390587928	Hv_44K_v2	CTTTATGAAGCTGCAAAGATCATCTATGCCTTCATCTCTAACTGGGCTAAGTTGGCTGTC	329	GeneList: darkorange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.060	0.980	1.923	1.578	0.964	0.792
Raw	93.495	124.083	229.912	284.106	63.614	58.054

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64329.1	4249	2e-24	2394 - 2453	100	60 / 60	plus	ABC05231 ABC18461
MLOC	MLOC_64329.3	4408	2e-24	2305 - 2364	100	60 / 60	plus	ABC05231 ABC18461
MLOC	MLOC_64329.2	4028	2e-24	2213 - 2272	100	60 / 60	plus	ABC05231 ABC18461
JLOC1	JLOC1_42228.2	4371	8e-25	2069 - 2128	100	60 / 60	plus
JLOC1	JLOC1_42228.1	4217	8e-25	2077 - 2136	100	60 / 60	plus
Harvest21	ABC05230	468	3e-25	330 - 389	100	60 / 60	plus
Harvest35	U35_1486	468	3e-25	330 - 389	100	60 / 60	plus

Contig Sequence (468 bp)

>U35_1486 468 Hv_44K_v2
GCCGTGTCGAAGAAGATGCTGTTTGGAGTCAGGTTGCCAAGGCTCAGTTGCGTGAAGGTC
TAGTTAGTGAAGCAATTGAGTCATTCATCCGCGCAGATGATGCCACACATTTCCTTGATG
TCATCCGTGCTGCTGAGGAAGCCGATGTATACCATGATCTTGTCAAGTACTTGCTGATGG
TAAGACAGAAGGCTAGAGAGCCCAAAGTCGATGGAGAACTCATCTTTGCATATGCGAAGA
TTGATAGGCTCAGTGACATTGAAGAGTTTATTCTTATGCCAAATGTTGCTAATCTTCAAA
ATGTTGGTGACCGGCTGTACGATGATGAACTTTATGAAGCTGCAAAGATCATCTATGCCT
TCATCTCTAACTGGGCTAAGTTGGCTGTCACCCTGGTCAAGCTGAAGCAGTTCCAAGGAG
CTGTAGATGCTGCTCGCAAGGCTAACAGCGCTAAAACATGGAAGGAGG

Homology of Contig U35_1486 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g01390.1	1709	3e-92	protein\|clathrin heavy chain, putative, expressed
Brachypodium v1_2	Bradi4g26877.1	1709	9e-94
Arabidopsis v10	AT3G08530.1	1703	3e-84	Clathrin, heavy chain \| chr3:2587171-2595411 REVERSE LENGTH=1703