barSeed - Barley Seed Development Database

Probe CUST_13655_PI390587928

Source Contig U35_1487

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13655_PI390587928	Hv_44K_v2	TGCCGCCAGCCATAAACACAAATACTGTCTGTATGTTAATTACCGGTTTCGATCTCTTTC	3252	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57760.1	5874	6e-24	137 - 195	100	59 / 59	minus	ABC05231 ABC34895
JLOC1	JLOC1_37489.1	6029	3e-24	5799 - 5857	100	59 / 59	plus
Harvest21	ABC34895	263	1e-24	166 - 224	100	59 / 59	plus	ABC34895
Harvest21	ABC05231	2879	1e-24	2800 - 2858	100	59 / 59	plus	ABC05231
Harvest35	U35_1487	3376	3e-25	3253 - 3312	100	60 / 60	plus

Contig Sequence (3376 bp)

>U35_1487 3376 Hv_44K_v2
CATTTCAAATATATAGAATCAGCTGCAAGGACTGGACAGATTAAAGAAGTTGAGCGAGTC
ACAAGAGAGTCTAATTTTTACGATGCTGAGAAGACAAAGAACTTTCTGATGGAAGCAAAA
CTACCTGATGCCCGTCCACTCATAAATGTCTGCGACCGCTTTGGCTTTGTTCCAGATCTT
ACTCACTATCTGTACACAAACAATATGCTCCGATACATCGAAGGCTATGTACAGAAGGTA
AACCCTGGAAATGCTCCGTTGGTAGTGGGGCAGTTACTTGATGACGAGTGCCCGGAAGAT
TTCATTAAGGGTTTGATTTTGTCTGTTCGATCTCTTCTTCCTGTCGAGCCACTGGTTGAT
GAATGCGAGAAGAGGAACCGTCTACGTTTGCTGACACAATTCTTGGAGCACTTAGTGAGC
GAGGGTGCCCAAGATGTGCATGTCCACAATGCTCTTGGGAAAATTATCATTGACAGCAAC
AACAATCCTGAGCATTTCCTTACTACCAACCCATTCTATGACTCCCGTGTGGTGGGTAAA
TACTGTGAAAAGAGGGATCCTACTCTTGCTGTTGTTGCTTACAGACGTGGACAGTGCGAT
GAAGAACTTATCAATGTTACCAACAAAAACTCGCTGTTCAAGCTGCAAGCTAGGTATGTG
GTTGAAAGAATGGACGGTGATCTGTGGGATAAAGTTCTACAGCCTGATAACGAATATAGA
AGGCAATTCATTGACCAAGTGGTTTCTACTGCATTGCCCGAAAGCAAGAGTCCTGAGCAA
GTTTCAGCTGCTGTTAAGGCTTTCATGACAGCTGACCTCCCTCATGAACTGATTGAACTT
CTTGAGAAGATTGTCCTTCAGAATTCCGCGTTCAGTGGAAACTTCAATCTTCAGAATCTG
CTCATCTTGACAGCCATCAAGGCGGACTCATCTAGGGTCATGGACTATGTTAACAGACTA
GACAACTTTGATGGTCCTGCCGTCGGAGAAGTTGCAGTTGAAGCACAACTTTATGAGGAG
GCTTTTGCCATATTCAAGAAGTTCAACTTAAATGTGCAGGCTGTCGATGTTCTGTTGGAT
AACATCCGAAGCATAGAAAGGGCGGAAGAGTTTGCATTCCGTGTTGAAGAAGATGCTGTC
TGGAGCCAGGTTGCCAAGGCCCAGTTGCGTGAAGGTTTAGTCAGCGAAGCAATCGAGTCC
TTCATTCGTGCCGATGATGTGACACATTTCCTTGATGTCATCCGTGCTGCTGAGGAAGCC
AATGTATACCATGATTTGGTCAAGTACTTGCTGATGGTTAGGCAAAAGGCAAGGGAGCCC
AAAGTTGACAGCGAACTCATCTTTGCATATGCTAAGATTGATAGACTCAATGACATTGAA
GAGTTTATTCTGATGCCGAATGTTGCCAATCTCCAAAATGTTGGTGACCGTCTGTATGAC
GAAGAACTCTATGAAGCTGCAAAGATCATCTATGCCTTCATTTCAAACTGGGCTAAGCTG
GCTGTCACCTTGGTCAAGCTGAAGCAGTTCCAAGGTGCTGTAGATGCTGCTCGCAAGGCT
AACAGCGCTAAAACATGGAAGGAGGTCTGCTTTGCTTGTGTTGATGCTGAGGAGTTCCGT
CTGGCACAAATCTGTGGTCTCAACATTATCGTTCAGGTTGATGACTTGGAGGAAGTGAGT
GAATACTACCAGAACAGAGGATGTTTCAGTGAACTTATTTCCCTCATGGAGAGTGGGCTT
GGACTTGAGCGGGCACACATGGGCATCTTTACTGAATTGGGAGTTCTCTATGCTAGATAC
CGCCCTGAGAAGCTCATGGAACACATCAAACTCTTCTCCACCCGTCTCAACATTCCTAAG
CTCATCCGTGCTTGTGATGAACAACAGCACTGGAAAGAGCTTACATACCTATACATTCAG
TATGATGAATTTGACAATGCTGCTACCACTATCATGAACCATTCTCCAGATGCATGGGAT
CACATGCAATTTAAGGATGTTTGTGTTAAAGTTGCAAATGTTGAGATTTATTACAAGGCT
GTGCATTTCTATTTGCAAGAGCACCCTGATCTCATCAATGATCTTCTCAATGTGCTTGCA
CTTCGTTTGGATCATACCAGAGTTGTAGATATAATGCGCAAGGCTGGTCAGTTGCATCTT
GTGAAACCATACATGGTTGCAGTTCAGAGCAACAATGTCTCTGCCGTCAATGAAGCTTTG
AATGAGCTTTATGTCGAAGAGGAAGACTACGAGAGGCTCCGTGAATCTGTTGACATGCAT
GATAACTTTGATCAGATAGGTCTTGCTCAGAAGCTTGAGAAGCATGAGTTGCTTGAGATG
AGAAGGATTGCTGCCTACATTTACAAGAAGGCTGGCAGATGGAAGCAATCTATTGCCCTC
TCGAAGAAAGACAACATGTACAAGGATTGCATGGAGACATGCTCACAGTCTGGTGACCGT
GAGCTCTCAGAGGACTTGCTTGTCTATTTCATCGAACAGGGAAAGAAAGAATGTTTTGCT
TCTTGCCTCTTCATTTGCTACGACTTGATTCGTGCGGATGTTGCTCTTGAGCTTGCATGG
ACGAATAACATGCTGGATTTCGCGTTCCCCTATCTATTACAGTTCATCCGTGAGTACACA
AGCAAGGTAGATGATTTGGTGAAGGACAGGATAGAATCGCAGAAGGAAGAGAAAGCTAAA
GATAACGAAGAGAAGGAACTAGTTGCGCAGCAGAACATGTACGCTCAATTGCTTCCTCTG
GCCTTGCCTGCTCCGCCTGGTATGATGGGCGGTCCGCCACCTCCGATGGGCGGAATGGGC
ATGCCGCCAATGGGCGGGATGGGTATGCCTCCGATGGGTCCCGGTCCAATGCCAGCATAC
GGGATGCCTCCAATGGGAAGCTACTGAGTCAACCAACCTCTGTTGTATGAATTTGAAGAG
TACAGATGATGTGAAATATCTCAGCTGACGCGGAGGGAGGAAATCATGAGAATGTATCCC
AGAGAGGTATCTTCCAAGGTGTATATCTGCGTCATTGGTTGTGTTCCAGTTAATATTCTT
TTGGTACCAGGACAATTTTGGCAAGCGAAATCTCTAGCCGAGTTTGAGTTAATTACAGGA
TGCTATATTATATATATTACGGTCGGATAGGATGAGCAGCAGCATGACTGGTTAGGCCCC
TGGTACCATTTGTATAGGTGTTATATTGAAAGTTTGTAGACATTCTGCATGTACACTTGT
CGGTGTTGGTGTTGCCGCCAGCCATAAACACAAATACTGTCTGTATGTTAATTACCGGTT
TCGATCTCTTTCAAAAAAAAAAAAAAAAATTTTTGTAGCTGAATGAACGCTTTCTTTGAA
CAACAGTATATTCTTT

Homology of Contig U35_1487 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os11g01380.1	1709	protein\|clathrin heavy chain, putative, expressed
Brachypodium v1_2	Bradi4g44977.1	1711
Arabidopsis v10	AT3G08530.1	1703	Clathrin, heavy chain \| chr3:2587171-2595411 REVERSE LENGTH=1703