barSeed - Barley Seed Development Database

Probe CUST_13653_PI390587928

Source Contig U35_1489

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13653_PI390587928	Hv_44K_v2	CCACTTCAAAAGCAACTTCTCTGAAATGACTTATACTTGGCCTTGAGGGTCTTCAAAAAA	1413	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.718	1.512	1.093	0.817	0.326	0.331
Raw	2018.210	2773.232	1764.463	2088.134	293.431	320.666

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_1489	1484	3e-25	1414 - 1473	100	60 / 60	plus

Contig Sequence (1484 bp)

>U35_1489 1484 Hv_44K_v2
GCAAAATGTCCAAGTCACTTGGTAATGTTGTTGATCCCCTCGAGGTGATAAATGGTACGA
CACTTGAAGATCTCCTCAAACGTTTGGAAGAAGGCAACCTGGATCAAAATGAGTTAAGTG
TTGCAAGAGAAGGGAAGAAGAAAGATTTTCCTGATGGCATCGCTGAATGTGGCACCGATG
CACTCCGTTTCGCACTGATTTCTTACACTTCTCAGTCTGACAAGATAAATCTTGATATCA
AGAGGGTTGTTGGATATCGCCAATGGTGCAATAAATTGTGGAATGCCATTCGTTTTGCAA
TGGGCAAGCTTGGTGATCATTATACTCCACCAGCAACCATTGTTGTGTCTTCAATGCCCC
CGGTCTGCAAATGGATACTCTCGGTACTTAACAAGGCTATTGGCAAGACTGTGACCTCAT
TAGAAGCATACAAGTTCGCTGATGCAACATCTGCTATTTACTCATGGTGGCAATACCAGC
TATGTGATGTATTTATAGAAGCTGTAAAACCTTACTTCTTCAATGACTCTCAAGAGTTCG
ATTCAGCAAGAGCTGCTTGTAGAGATGCCCTATGGGTGTGCCTTGACAATGGTTTGCGTC
TGCTCCACCCATTCATGCCTTATGTAACAGAAGAACTCTGGCAACGTCTTCCTCAGCCCA
AAGATTCTTGCAGAAAAAATTCCATTATGATATCAGAATATCCATCTATTGTTAAGGAAT
GGGCGGATGATAAACTTGAAAGTGAAATTGGTATTATCTTGGATACTGTGAACAAACTAA
GATCTCTGAAGCCAACGACAGATACAAATGAAAGGCGACCTGCTTTTGCACTTTGTCGAG
GCGAAGATATTGCTGCCACTGTTCAGTGCTATCAATCTCTAGTGGTGTCTCTTTCTTCTG
TATCGTCGCTTAAGATCCTGGCAGAGAGTGATGAAACTCCACCTGACTGTTCAACTGCTG
TTGTAAACAAAGACCTATCCGTATACCTTCAGCTTCAAGGGGCTCTAAATGCGGAAGTGG
AGCTCGAAAAGCTAAGGAAAAAGAGGGATGAAATCCAAAAGTTACAGCATGCCCTGTCTC
AGAAGATGGAAGCGTCCGGTTACAGAGAGAAGGCTCCCCCCAGTGTCCAAGAGGAGGACA
TGAGGAAGCTCACCGCCTTTTTCGAGCAACTGCGGGTCATCGGTGAGGCTGAGAAGAAAC
TAGATGCGTAATCTGGCAGTGCTTTTGAGTCGGCTCTCTGTTTCTATTGGGACCTACTGG
CATTTTTGTTTGGAAGTTGATACTGCACCTTTTTTTTGCGGATGGTGGTGATGTCACATT
TATAGAAAATTCAAATGGGACAATGAAACTCCAGTTTCTCAAAAAAAAAAAAAAAAAGTT
TGTAAATGATGTTGATCTGTGAGTGTTGAGTGTCCACTTCAAAAGCAACTTCTCTGAAAT
GACTTATACTTGGCCTTGAGGGTCTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1489 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g48850.2	1055	0.0	protein\|valyl-tRNA synthetase, putative, expressed
Brachypodium v1_2	Bradi2g04960.1	1044	0.0
Arabidopsis v10	AT1G14610.1	1108	5e-149	\| Symbols: TWN2, VALRS \| valyl-tRNA synthetase / valine--tRNA ligase (VALRS) \| chr1:5008502-5014486 REVERSE LENGTH=1108