- Probe CUST_13644_PI390587928
- Source Contig U35_316
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_13644_PI390587928 | Hv_44K_v2 | GACTACATGGTCAACGCAGCTGCTGACGACGAAGAAATGAAACTCTATTTGGAAAATTGT | 418 | GeneList: midnightblue MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.010 | 0.017 | 0.849 | 1.235 | 1.999 | 2.567 |
Raw | 430.911 | 2683.152 | 118782.666 | 230552.666 | 143250.333 | 210084.000 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_22225.1 | 793 | 2e-24 | 229 - 288 | 100 | 60 / 60 | minus | ABC00222 ABC00254 ABC00295 ABC00526 ABC00796 ABC00797 ABC32936 ABC33046 ABC45110 ABC52753 ABC52840 ABC52976 |
JLOC1 | JLOC1_15410.1 | 1826 | 8e-25 | 506 - 565 | 100 | 60 / 60 | plus | |
Harvest21 | ABC32570 | 501 | 3e-25 | 414 - 473 | 100 | 60 / 60 | plus | |
Harvest21 | ABC00796 | 520 | 3e-25 | 297 - 356 | 100 | 60 / 60 | plus | ABC00796 |
Harvest21 | ABC00779 | 802 | 3e-25 | 419 - 478 | 100 | 60 / 60 | plus | |
Harvest21 | ABC00526 | 759 | 3e-25 | 363 - 422 | 100 | 60 / 60 | plus | ABC00526 |
Harvest21 | ABC00295 | 1054 | 3e-25 | 763 - 822 | 100 | 60 / 60 | plus | ABC00295 |
Harvest21 | ABC00254 | 906 | 3e-25 | 402 - 461 | 100 | 60 / 60 | plus | ABC00254 |
Harvest35 | U35_316 | 478 | 3e-25 | 419 - 478 | 100 | 60 / 60 | plus | |
Harvest35 | U35_214 | 930 | 3e-25 | 429 - 488 | 100 | 60 / 60 | plus |
Contig Sequence (478 bp)
>U35_316 478 Hv_44K_v2 CCATACCCACAACAACCACAACAACCCTTCCCACCGCAACAACCATTTCCACAACAACCA CCATTTGGGTTACAACAACCCAAATGGTGGTTGTTGTGGAAATGGTTGCTGTGTTGTACA AGACAGCCAACCAGCCATGGGCCTCAAGGGTGTGATGGTGTGTTTACTTATACTGGGGTT GGTTCTCGAACAGGTGCAAGTAGAAGGCAAGAGTTGCTGCAGGAGCACCCTAGGAAGAAA CTGCTACAACCTTTGCCGCGTCCGTGGTGCTCAGAAGTTATGCGCAGGCGTCTGTAGGTG TAAACTCACAAGTAGCGGAAAATGCCCTACAGGCTTCCCCAAATTGGCCCTTGTGTCCAA CTCAGATGAACCAGACACCGTCAAGTATTGCAACTTGGGGTGTAGGGCTTCCATGTGTGA CTACATGGTCAACGCAGCTGCTGACGACGAAGAAATGAAACTCTATTTGGAAAATTGT
Homology of Contig U35_316 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |